Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1440 ATGGGCACCCCACAAGTTATCACATGCAAAGCTGCGGTATGCTGGGGGATAGGAGAGGGTGTGAAGGTGGAAGAGGTACAAGTTGACCCACCAAAAGCATCTGAAGTTAGAGTTAAGATGCTTTGTGCCAGTGTCTGCCACACAGACATCTTAAGCACTGAAGGATTCCCACATACTACTTATCCTCTAGCTCCAGGACATGAAGGAGTTGGTGTTGTGGAGAGTATTGGGGAGAAAGTGACAAACCTAAAAGTAGGGGATGTGGTGATTCCGTTATACATAGGGGAGTGCCAAGAGTGCGAGAACTGCATTTCAGGGAAGACCAACCTATGCATGACATACCCTATGTGGTTGAGTGGCCTGATGCCGGACAACACTTCGAGAATTTCCATCAGGGGCAAAAGGGCATACCACTCTTTGAGCTGCTCCACATGGTCGGAGTACATGGTGGCTAATGCCAACTACGTTCTCAAGGTTGACCCAACTATCAATCTAGCCCATGCCAGCTTCCTCTCTTGTGGATTCTCAACTGGTTTTGGGGCTGCTTGGAAGGAAGCTAAGGTTGAAAAGGGATCAAGTGTAGCTGTTTTTGGTCTTGGTGCTGTTGGATTAGGGGCTATAAGTGCAGCCAAAATGTTAGGGGCAACAAGAATCATTGGGATTGACAAAAATGAGATGAAGAGGGACAAAGGAGAAGCATTTGGAATGACACACTTCATAAATCCTAGTGAATCAGAAAAGTCTGCTTCAAAATTGGTCAAGGAATTGAGTGGGGGAATTGGTGTGGACTATTCCTTTGAGTGCTCTGGAATTGGCCCTTTGCTGAATGAGGCCATGGAATCCACTAAAGTGGGAATAGGCAAGACAATAGCTATCGGTTCAGGAAATAAAGTTCTACAGCTCAGTCATTCGGCCGTTATGAATGGAAGAACATTGAAGGGTTCTATTTTTGGAGGCATAAAAGCAAAATCTGACCTTTCTATTATAGCGGACAAGTGCCAGAAAAAGGAAATACCCATTGATGAACTTCTGACCCAAGAAGTCCCGCTGGCAGATATAAGCACTGCCTTGGAGCTATTGAAACAGCCAGATTGCGTCAAGGTTGTCATCAAGATGTGTGATTAA 1125 0.4551 MGTPQVITCKAAVCWGIGEGVKVEEVQVDPPKASEVRVKMLCASVCHTDILSTEGFPHTTYPLAPGHEGVGVVESIGEKVTNLKVGDVVIPLYIGECQECENCISGKTNLCMTYPMWLSGLMPDNTSRISIRGKRAYHSLSCSTWSEYMVANANYVLKVDPTINLAHASFLSCGFSTGFGAAWKEAKVEKGSSVAVFGLGAVGLGAISAAKMLGATRIIGIDKNEMKRDKGEAFGMTHFINPSESEKSASKLVKELSGGIGVDYSFECSGIGPLLNEAMESTKVGIGKTIAIGSGNKVLQLSHSAVMNGRTLKGSIFGGIKAKSDLSIIADKCQKKEIPIDELLTQEVPLADISTALELLKQPDCVKVVIKMCD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1440 374 SMART PKS_ER_names_mod 16 370 IPR020843 GO:0016491
Glsi04g1440 374 SUPERFAMILY GroES-like 4 189 IPR011032 -
Glsi04g1440 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 334 IPR036291 -
Glsi04g1440 374 CDD liver_alcohol_DH_like 7 371 - -
Glsi04g1440 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Glsi04g1440 374 Pfam Zinc-binding dehydrogenase 201 320 IPR013149 -
Glsi04g1440 374 Gene3D - 178 315 - -
Glsi04g1440 374 Gene3D - 13 367 - -
Glsi04g1440 374 FunFam S-(hydroxymethyl)glutathione dehydrogenase 178 315 - -
Glsi04g1440 374 PANTHER ALCOHOL DEHYDROGENASE 5 364 - -
Glsi04g1440 374 FunFam alcohol dehydrogenase 1-like isoform X1 17 177 - -
Glsi04g1440 374 Pfam Alcohol dehydrogenase GroES-like domain 34 159 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1440 Glsi-ChrGlsi04 17701885 17706082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1440 34 364 Monolignol Biosynthesis Gene Families AT2G21730 27.300 5.07e-18 82.8