Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1439 ATGAGCACTTCACAAGTGATCACTTGCAAAGCTGCGGTATGCTGGGGGATCAGGGAGGGTGTGAAGGTGGAAGAGATACAAGTTGACCCACCCAAAGAATCTGAAGTTAGAGTTAAGATGCTTTGTGCCAGTCTCTGCCACACAGACATCTTAAGCACTGAAGGATTCCCACATGGTAATTATCCTCTAGCACTAGGACATGAAGGTGTTGGTGTTGTGGAGAGCATAGGGGGAAAAGTGACGGATCTAAAAGCAGGGGATGTGGTGATTCCATTATACGTAGGGGAGTGCAAAGAATGCGAGAACTGCGTTTCTGGGAAGACCAACCTGTGCACTACGTATCCGATAAGAATAACTGGCCTAATGCCAGACAACACTTCAAGAATTTCCATCAGAGGGCGGATGGCACACCACCTTCTGAGCTGTGCCACATGGTCTGAGTACATGGTGATTGATGCTAAGTACCTTCTGAAGGTTGACCCAACCATTGATGTAGCCCATGCCAGCTTCATTTCTTGTGGGTTTTCAACTGGTTTTGGGGGTGCTTGGAAGGAAGCCAAGGTCAAGAAGGGATCAAGCGTAGCTGTTTTTGGTCTTGGTGCTGTTGGTTTAGGGGCTATAAGTGCAGCCAAAATGCTAGGGGCAACAAAGATCATTGGAATTGACAAAAATGAAATGAAGAGAGGAAAAGGAGAAGCTTTTGGAATGACACACGTCATAAATCCTAGTGAATCAGAAAAATCTGCCTCAGAACTGGTTAAGGAATTGAGTGGCGGAATGGGCGTGGATTATTCCATTGAATGCACTGGAGTTGGCCCTTTGCTGAATGAAGCCATGGAATCCACAAAGCTGGGGATAGGTATGACAATAGCAATCGGAACAGGAAGTGAAGCTTTTGTGCAGCTTAGTCTTCTTCCCCTTCTGTTTGGAAGAAGTTTGAAAGGTTCTGCCTTTGGAGGCATAAAAGCAATATCTGACCTTTCTATTATAGCTGACAAGTGCCTGAAAAAGTTCCCAATTGACGAACTTCTGACCCACGAAGTCCCATTGGCAGATATAAGCACTGCATTTGAGCTACTGAAACAGCCAGATTGCGTCAAAGTTGTCATCAAGATGTGA 1119 0.4558 MSTSQVITCKAAVCWGIREGVKVEEIQVDPPKESEVRVKMLCASLCHTDILSTEGFPHGNYPLALGHEGVGVVESIGGKVTDLKAGDVVIPLYVGECKECENCVSGKTNLCTTYPIRITGLMPDNTSRISIRGRMAHHLLSCATWSEYMVIDAKYLLKVDPTIDVAHASFISCGFSTGFGGAWKEAKVKKGSSVAVFGLGAVGLGAISAAKMLGATKIIGIDKNEMKRGKGEAFGMTHVINPSESEKSASELVKELSGGMGVDYSIECTGVGPLLNEAMESTKLGIGMTIAIGTGSEAFVQLSLLPLLFGRSLKGSAFGGIKAISDLSIIADKCLKKFPIDELLTHEVPLADISTAFELLKQPDCVKVVIKM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1439 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 332 IPR036291 -
Glsi04g1439 372 FunFam S-(hydroxymethyl)glutathione dehydrogenase 178 316 - -
Glsi04g1439 372 Pfam Zinc-binding dehydrogenase 201 323 IPR013149 -
Glsi04g1439 372 CDD liver_alcohol_DH_like 7 371 - -
Glsi04g1439 372 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Glsi04g1439 372 Gene3D - 178 316 - -
Glsi04g1439 372 PANTHER ALCOHOL DEHYDROGENASE 5 364 - -
Glsi04g1439 372 SMART PKS_ER_names_mod 16 370 IPR020843 GO:0016491
Glsi04g1439 372 FunFam alcohol dehydrogenase 1-like isoform X1 18 177 - -
Glsi04g1439 372 Pfam Alcohol dehydrogenase GroES-like domain 34 158 IPR013154 -
Glsi04g1439 372 SUPERFAMILY GroES-like 3 189 IPR011032 -
Glsi04g1439 372 Gene3D - 12 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1439 Glsi-ChrGlsi04 17671400 17674158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1439 33 173 Monolignol Biosynthesis Gene Families AT4G37970 31.469 2.34e-15 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1439 04 17671400 17674158 Glsi04g1439 04 17671400 17674158 ECH