Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1437 ATGAAAAAGGTGAGTTCCGACGTGGATGGTTACAGTATATTTGTTGCTGAGAATGCTTGTGGTCCATTTGCAATTGTAGCTGCTGTATGCTGGGGGATCGGGGAGGGTGTGAAGGTGGAAGAGATACAAGTTGACCCACCCAAAGAATCTGAAGTTAGAGTTAAGATGCTTTGTGCCAGTCTCTGCCACACAGACATTTTAAGCACTGAAGGATTCCCACATGGTAATTATCCTCTAGCGCTAGGACATGAAGGTGTTGGTGTTGTGGAGAGCATAGGGAGAAACGTGACGGATCTAGAAGCAGGGGATGTGGTGATTCCATTATACGTAGGGGAGTGCAAAGAATGCGAGAACTGCGTTTCTGGGAAGACCAACCTGTGCACTACGTATCCGATAAGAATAACTGGCCTAATGCCAGACAACACTTCAAGAATGTCCATCAGAGGACAGAGGGCATACCACGTTCTAAGCTGTGCCACATGGTCTGAGTACATGGTGATTGATGCTAATTACGTTCTCAAGGTTGACCCAACCATTGATCTAGCCCATGCCAGCTTCATTTCTTGTGGGTTCACAACTGGTTTTGGGGGTGCTTGGAAGGAAGCCAAGGTCAAGAAGGGATCAAGCGTAGCTGTTTTTGGTCTTGGTGCTGTTGGTTTAGGGGCTATAAGTGCAGCGAAAATGCTTGGGGCAATAAAGATAATTGGAATTGACAAAAATAAAATGAAGAGAGGAAAAGGAGAAGCTTTTGGAATGACACACTTCATAAATCCTAGTGAATCAGAGAAATCTGCTTCAGAACTGGTCAAGGAATTGAGCGGTGGATTGGGTGTGGATTATTCCATTGAGTGCACTGGAGTTGGCCCTTTGCTGAATGAAGCCGTAGAATCCACAAAAGTGGGGATAGGTAAGACAATAGCAATCGGTACAGGAAGTGAAGCTTCGGTGCAGCTTAATCTTCTTCCCGTTCTGTTAAGAAGAAGTTTGAAGGGTTCTGCCTTTGGAGGCATAAAAGCAATATCTGACTTTTCAATTATAGTTGACAAGTGCCTGAAAAAGGAAATCCCCATTGATGAACTTCTGACCCACGAAGTCCCGTTGGCAGATATAAGCACTGCATTTGAGCTCTTGAAACAGCCAGATTGCGTCAAAGTTGTCATCAAGATGTGA 1170 0.4487 MKKVSSDVDGYSIFVAENACGPFAIVAAVCWGIGEGVKVEEIQVDPPKESEVRVKMLCASLCHTDILSTEGFPHGNYPLALGHEGVGVVESIGRNVTDLEAGDVVIPLYVGECKECENCVSGKTNLCTTYPIRITGLMPDNTSRMSIRGQRAYHVLSCATWSEYMVIDANYVLKVDPTIDLAHASFISCGFTTGFGGAWKEAKVKKGSSVAVFGLGAVGLGAISAAKMLGAIKIIGIDKNKMKRGKGEAFGMTHFINPSESEKSASELVKELSGGLGVDYSIECTGVGPLLNEAVESTKVGIGKTIAIGTGSEASVQLNLLPVLLRRSLKGSAFGGIKAISDFSIIVDKCLKKEIPIDELLTHEVPLADISTAFELLKQPDCVKVVIKM 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1437 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 179 351 IPR036291 -
Glsi04g1437 389 SUPERFAMILY GroES-like 24 205 IPR011032 -
Glsi04g1437 389 SMART PKS_ER_names_mod 32 387 IPR020843 GO:0016491
Glsi04g1437 389 Pfam Zinc-binding dehydrogenase 217 338 IPR013149 -
Glsi04g1437 389 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 82 96 IPR002328 GO:0008270|GO:0016491
Glsi04g1437 389 CDD liver_alcohol_DH_like 27 388 - -
Glsi04g1437 389 Gene3D - 28 384 - -
Glsi04g1437 389 Gene3D - 194 332 - -
Glsi04g1437 389 FunFam alcohol dehydrogenase 1-like isoform X1 33 193 - -
Glsi04g1437 389 SUPERFAMILY GroES-like 341 387 IPR011032 -
Glsi04g1437 389 Pfam Alcohol dehydrogenase GroES-like domain 50 175 IPR013154 -
Glsi04g1437 389 FunFam S-(hydroxymethyl)glutathione dehydrogenase 194 332 - -
Glsi04g1437 389 PANTHER ALCOHOL DEHYDROGENASE 25 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1437 Glsi-ChrGlsi04 17590137 17593415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1437 49 381 Monolignol Biosynthesis Gene Families AT2G21890 26.923 3.32e-16 77.8