Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1435 ATGAGCACCCCACAAGTTATCACATGCAAAGCTGCGGTATGCTGGGGTATCGGGGAGGGTGTGAAGATGGAAGAGATACAAATTGACCCACCCAAACCATCTGAAGTTAGAGTTAAGATGCTCTGTGCCAGTCTCTGCCACACAGACGTCATAAGCGCTCAAGGATTCCCGCATGGTAATTTTCCTCTAGCACTAGGACATGAAGGTGTTGGTGTTGTGGAGAGCACAGGGGAAAAAGTGACAGATCTGAAAGCAGGGGATGTGGTGATTCCATTGTACATAGGGGAGTGCAAAGAATGCGAGAACTGCGTTTCTGGGAAGACCAACCTGTGCTCTACATACCCCATAAGATTGACTGGCCTAATGCCAGACAACACTTCGAGAATGTCCGTTAAAGGGCAGAGGGCATACCACGTTTTGAGCTGCGCCACATGGTCTGAGTACATGGTGATTGATGCTAATTATGTTCTCAAAGTTGACCCAAGCATTGATTTAGCCCATGCCAGCTTCATTTCTTGTGGGTTCTCAACTGGTTATGGGGGTGCTTGGAAGGAAGCCAAGGTCAAGAAGGGATCAAGTGTTGCTGTTTTTGGTCTTGGTGCCGTTGGTTTAGGGGCTATAAGTGCAGCCAAAATGCTAGGGGCAACAAAGATAATTGGCATTGACAAAAATGAAATGAAGAGAGGGAAAGGAGAAGCTTTTGGAATGACACACTTCATAAATCCTAGTGAATCAGAAAAATCTGCTTCAGAACTGATCAAGGAATTGAGTGGTGGAACGGGTGTGGATTATTCCATTGAGTGCACTGGAGTTGCTCCTTTGCTGAACGAAGCCACGGAATCCACAAAAGTGGGGATAGGTAAGACAATTGCAATCGGCACAGGAAGTGAAGCTTTGGTGCAGTTTAATCTTCTCGCCATTCTATATGGAAGAAGATTGAAAGGTTCTGCCTTTGGAGGCATAAAAGCAATTTCTGACCTTTCTATTATAGCTGACAAGTGCCAGAAAAAGGAAATCCCCATTGACGAACTTCTGACCCATGAAGTCCCATTGGCAGAAATAAGCACTGCATTTGAGCTCTTGAAACAGCCAGATTGCGTCAAAGTCGTCATCAAGATGTGA 1122 0.4563 MSTPQVITCKAAVCWGIGEGVKMEEIQIDPPKPSEVRVKMLCASLCHTDVISAQGFPHGNFPLALGHEGVGVVESTGEKVTDLKAGDVVIPLYIGECKECENCVSGKTNLCSTYPIRLTGLMPDNTSRMSVKGQRAYHVLSCATWSEYMVIDANYVLKVDPSIDLAHASFISCGFSTGYGGAWKEAKVKKGSSVAVFGLGAVGLGAISAAKMLGATKIIGIDKNEMKRGKGEAFGMTHFINPSESEKSASELIKELSGGTGVDYSIECTGVAPLLNEATESTKVGIGKTIAIGTGSEALVQFNLLAILYGRRLKGSAFGGIKAISDLSIIADKCQKKEIPIDELLTHEVPLAEISTAFELLKQPDCVKVVIKM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1435 373 SMART PKS_ER_names_mod 16 371 IPR020843 GO:0016491
Glsi04g1435 373 Pfam Zinc-binding dehydrogenase 201 323 IPR013149 -
Glsi04g1435 373 SUPERFAMILY GroES-like 325 371 IPR011032 -
Glsi04g1435 373 FunFam S-(hydroxymethyl)glutathione dehydrogenase 178 316 - -
Glsi04g1435 373 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Glsi04g1435 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 335 IPR036291 -
Glsi04g1435 373 Gene3D - 178 316 - -
Glsi04g1435 373 PANTHER ALCOHOL DEHYDROGENASE 5 365 - -
Glsi04g1435 373 CDD liver_alcohol_DH_like 7 372 - -
Glsi04g1435 373 SUPERFAMILY GroES-like 3 189 IPR011032 -
Glsi04g1435 373 Pfam Alcohol dehydrogenase GroES-like domain 34 159 IPR013154 -
Glsi04g1435 373 FunFam alcohol dehydrogenase 1-like isoform X1 17 177 - -
Glsi04g1435 373 Gene3D - 12 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1435 Glsi-ChrGlsi04 17533176 17536916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1435 34 365 Monolignol Biosynthesis Gene Families AT2G21730 25.588 1.49e-14 72.4