Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1410 ATGGCTGCGGTTGCTGAGATTTCCCTTGATGCAGCAGCTGCTAACAAATTGGACTCAAAACCCAAGTCCGAATCCGAATTCACTGTGCAGAACCTCGTCGATATGTTCACAAAGCTGAATCCTTTGGCGAAGGAGTTTGTCCCTTCAAAATATTCTCATCTTGATCATCTACATCAGAGCTATCATCAGCTCTCACCCAACAATTTTCTGGTCAACAATAAGCCATCAGCTGATGACAATTATCCAAACAACGGAAGGAGAAGAAATAGTTATAACCAAGGGAGGAGAAGGTCGAATGGAAGAGTGTTTAAGGCTCAAAGAGAAGATAGTGTTAGAAGAACAGTATATGTTTCTGATATAGATCATCAGGTTACTGAGGAGCGGCTTGCTGCCTTATTTAGCAGTTGTGGACAAGTTATTGATTGCCGAATTTGTGGTGATCCACATTCAATTCTTCGTTTTGCATTTGTGGAGTTTGCAGACGAGCAAGGTGCAAGAACAGCTTTAAACCTTGGTGGCACTGTGCTTGGATACTATCCAGTCAGGGTCCTTCCTTCCAAAACTGCTATCCTTCCCGTGAATCCTACATTCCTCCCTAGGTCAGATGATGAGCGGGAAATGTGTAGCAGAACTGTCTACTGTACAAATATTGATAAACAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAAACAGCTTGTGGTGAGGTTACTCGCTTGAGGCTTTTAGGGGATCATGTGCATTCGACACGAATTGCTTTCGTGGAATTTGCAATGGCAGAAAGTGCTATTATTGCACTAAATTGTAGTGGGATGCTCTTGGGAAGTCAACCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGGGTTGCTCGTCCAACACTGCATTAG 897 0.4326 MAAVAEISLDAAAANKLDSKPKSESEFTVQNLVDMFTKLNPLAKEFVPSKYSHLDHLHQSYHQLSPNNFLVNNKPSADDNYPNNGRRRNSYNQGRRRSNGRVFKAQREDSVRRTVYVSDIDHQVTEERLAALFSSCGQVIDCRICGDPHSILRFAFVEFADEQGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKQVSQAEVKNFFETACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGSQPIRVSPSKTPVRPRVARPTLH 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1410 298 SUPERFAMILY RNA-binding domain, RBD 200 291 IPR035979 GO:0003676
Glsi04g1410 298 Pfam Ataxin-2 C-terminal region 35 49 IPR009818 -
Glsi04g1410 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
Glsi04g1410 298 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 292 - -
Glsi04g1410 298 SMART rrm1_1 114 184 IPR000504 GO:0003723
Glsi04g1410 298 SMART rrm1_1 211 282 IPR000504 GO:0003723
Glsi04g1410 298 SUPERFAMILY RNA-binding domain, RBD 75 186 IPR035979 GO:0003676
Glsi04g1410 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 286 IPR000504 GO:0003723
Glsi04g1410 298 MobiDBLite consensus disorder prediction 68 103 - -
Glsi04g1410 298 CDD RRM1_CID8_like 111 190 IPR034823 -
Glsi04g1410 298 FunFam Polyadenylate-binding protein-interacting protein 10 204 282 - -
Glsi04g1410 298 Gene3D - 198 291 IPR012677 -
Glsi04g1410 298 Gene3D - 71 189 IPR012677 -
Glsi04g1410 298 FunFam Polyadenylate-binding protein-interacting protein 11 78 190 - -
Glsi04g1410 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Glsi04g1410 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Glsi04g1410 298 MobiDBLite consensus disorder prediction 68 99 - -
Glsi04g1410 298 CDD RRM2_CID8_like 206 287 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1410 Glsi-ChrGlsi04 16818042 16824226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1410 101 267 Eukaryotic Initiation Factors Gene Family AT1G34140 25.862 7.32e-12 63.5