Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1384 ATGCTGACGAGAAAAGTCCACTCAAAAAGCTTCTTAGAACCCCTAAAAAATGATGGGTTTTGCTTTCACGACTGTGTCTTACTTTTGCAGTATCTGAGGGATAACGGGGACGTAAACTATGGCCGGTCACTTCATTCGTTCTTCATTAAAAGTGGCCTTGACAGAGATGTCTTTGTACAGAACAATATGATAAGGTTTTATGGGGATACTGGTGACCTGAAACATGCTCATCTCTTGTTTGATGAAATTCCTGAACCGAGTTTAATTTCTTGGACTAGTTTAGTCTCTTCTTACGTCCATGACGGGCAGCATGAAATGGGTCTGCACTTGTTTTCTCTCTTATGTCAGTCTGGGTTGCGGCCAAATGAGTTCGGTTTCTCTGTGGCGCTCAAGGCATGCAGAGTTATGCAAGATCCAATCATGGGGAGACTCATTCATGGCTTAATAATTAAAAGTGGGTTTGAGTCACATAGCTTTTGTGGTGCTTCGACTGTTCATATGTATGCTGAATGTGGCGATATCGAGAACTCAAGGAAGCTCTTTGACGGGATTCCTTTTGGAGAAGGGTCCGAAGCCTTATGGAATACTTTGCTGAATGCTTATGTGCAGATGTCTGATGCAGAGGGAGCTCTGTGCTTGTTTCATAAGATGGGGCACTCCGCAATATCGCCAAATTGTTATACTTGCACAATCCTTTTTAAACTCTGTGCTGATGTGCTTGATCTTGAACTTGGAAGGTGTATTCATGGCCAAACTGTGAAGATTGGGATTGAAAATGATGTTGTGGTGGGTGGAGCTCTTGTTGACACCTATTCAAAACTGGGATTGTTAGATGATGCTTGTACAGTGTTCCAAATTCTTGAGGAGAAGGACAATGTTGCATTATGCTCATTGTTGGCTGGGTTCAATCAGATTGGAGAAGCTAAAGAAGGCCTAACATTTTATAAAGGTTTTCTTTATGAAGGTAATAAACCAGACCCATTTACTTGTGCAAGTATTGTTAGTTTGTGTTCGAATTTGAAGACAGAGGTTGCTGGTACCCAAGTTCACTGTAGTTTCATCAAACTTGGCTTTATGATGGACTCATATCTTGGTAGTTCCTTTATTAACATGTATGGAACCTTTGGAATGATTTCTGATGCTTATAAATGTTTCCTTGAGGTTTGCTATAAAAATGAAATCTGCATAAGTGCCATGATCAATTCTTTAGTTCTAAATTCAAATGACGAAAAAGCTTTAGAACTGTTTTGTTGGATGGGAGAAGTTGGTATTGTACCAAGCAAGTCTACAATCAGCTATATTCTACGAGCTTGTGGGAACCTTTATATGCTTAAAGAAGGAAGATCTTTCCATTCTTACATTATTAAAAGCCATTGTGAAGATGACACTAAGTTGGGCTTAGAAAATGCTCTTCTTGAGATGTACTCTAGATGTGGAGTTATTGAGGACGCAAAATTGGTTTTTCACGAGATGCAACTGCGGAATGAGTTTTCCTGGACTACTGTCATGTCTAGATGCAGTGACTCAGGGCAATTTGCAGAAGCTTTTGGGCTGTTCCGTGATATGCTTTTTTATTCAACGTCTTCAAAACCTAGTCAGTTTACCTTGGTTAGTGTTATTCAGGCTTGTGCAATAACAGAGGCTCTTGATTTAGGAAAACAAGTCCATTCTTATATCATAAAAGTAGGATTTGAATATTGTCCCTTCATCGGAAGTGCCCTGATTAACATGTATGCAGCATTTAAACATGAAATTTTGAATGCTTTTTTGGTATTCATGTCCATGAAAGTTCAAGATCTTATCTCTTGGAGCATCATGTTATCTTCATGGGTCCAAAATGGTTATCATGAAGAAGCTCTTAAACTTTTTGCAGAATTCCAGACTTTTCCCATTTTTCAGGTTGATGAGTCTATCTTATCCAGCTGTCTCTCGGCTGCTGCTGGCTTAGCAGCACCAGAGATAGGTAAATGTTTCCATTCCTGGGTTATCATATTTGGCTTTGAAAATTATCTTCAGGTGGTTTCTTCCATTATAGACATGTATAGTAAATGTGGAAATATTAAAGACGCCCGTAAGCTTTTCAATTCTATCAGTGACCACAACTTAGTATCTTGGACAACTATGATTTATGGATATGCTTATTATGGGCTTGGAAAAGAAGCTATTGACCTGTTTAATGAGGCTAAAAAAGCTGGGTTGGAACCTGATGGTGTCACCTTCTCTGGGGTTTTAACTGCATGCAGTCATGCTGGACTAGTAAAGGAAGGGTGGGAACATTTTGAGTACATGAGAAGTAGATACAACTGGGAAGTAACAATAAATCATTATGCCTGCATGGTTGATCTTCTAGGTCGAGCAGCAAAATTGGAAGAAGCAGAGGCATTGATAAAGAAATCTCCATTTCATTCAAAATCTCTTCTATGGAAGACATTGCTGGGTGCTTGCTGTAAACATGAGAATGCTGAAGTAGGAATCCGAATATCAAAGATGCTTGCAGATATAGAGCTGAATGAACCCTCAACCTACGTTCTACTTTCTAACATTTATGCATCAGCATCAATGTGGAAAAATTCCACGGAGTTGAGAAACAAAATGGTGGAGTGGAGTGTTAATAAGCAACCTGGTAGAAGTTGGATTCAGGTGGCAGGTTAG 2652 0.3944 MLTRKVHSKSFLEPLKNDGFCFHDCVLLLQYLRDNGDVNYGRSLHSFFIKSGLDRDVFVQNNMIRFYGDTGDLKHAHLLFDEIPEPSLISWTSLVSSYVHDGQHEMGLHLFSLLCQSGLRPNEFGFSVALKACRVMQDPIMGRLIHGLIIKSGFESHSFCGASTVHMYAECGDIENSRKLFDGIPFGEGSEALWNTLLNAYVQMSDAEGALCLFHKMGHSAISPNCYTCTILFKLCADVLDLELGRCIHGQTVKIGIENDVVVGGALVDTYSKLGLLDDACTVFQILEEKDNVALCSLLAGFNQIGEAKEGLTFYKGFLYEGNKPDPFTCASIVSLCSNLKTEVAGTQVHCSFIKLGFMMDSYLGSSFINMYGTFGMISDAYKCFLEVCYKNEICISAMINSLVLNSNDEKALELFCWMGEVGIVPSKSTISYILRACGNLYMLKEGRSFHSYIIKSHCEDDTKLGLENALLEMYSRCGVIEDAKLVFHEMQLRNEFSWTTVMSRCSDSGQFAEAFGLFRDMLFYSTSSKPSQFTLVSVIQACAITEALDLGKQVHSYIIKVGFEYCPFIGSALINMYAAFKHEILNAFLVFMSMKVQDLISWSIMLSSWVQNGYHEEALKLFAEFQTFPIFQVDESILSSCLSAAAGLAAPEIGKCFHSWVIIFGFENYLQVVSSIIDMYSKCGNIKDARKLFNSISDHNLVSWTTMIYGYAYYGLGKEAIDLFNEAKKAGLEPDGVTFSGVLTACSHAGLVKEGWEHFEYMRSRYNWEVTINHYACMVDLLGRAAKLEEAEALIKKSPFHSKSLLWKTLLGACCKHENAEVGIRISKMLADIELNEPSTYVLLSNIYASASMWKNSTELRNKMVEWSVNKQPGRSWIQVAG 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1384 883 FunFam pentatricopeptide repeat-containing protein At2g33680 674 883 - -
Glsi04g1384 883 Gene3D Tetratricopeptide repeat domain 672 882 IPR011990 GO:0005515
Glsi04g1384 883 Gene3D Tetratricopeptide repeat domain 523 660 IPR011990 GO:0005515
Glsi04g1384 883 Gene3D Tetratricopeptide repeat domain 349 459 IPR011990 GO:0005515
Glsi04g1384 883 Gene3D Tetratricopeptide repeat domain 4 140 IPR011990 GO:0005515
Glsi04g1384 883 Gene3D Tetratricopeptide repeat domain 244 348 IPR011990 GO:0005515
Glsi04g1384 883 Gene3D Tetratricopeptide repeat domain 143 243 IPR011990 GO:0005515
Glsi04g1384 883 Pfam PPR repeat family 701 748 IPR002885 -
Glsi04g1384 883 Pfam PPR repeat family 193 237 IPR002885 -
Glsi04g1384 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 701 735 IPR002885 -
Glsi04g1384 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Glsi04g1384 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Glsi04g1384 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Glsi04g1384 883 NCBIfam pentatricopeptide repeat 497 523 IPR002885 -
Glsi04g1384 883 NCBIfam pentatricopeptide repeat 89 123 IPR002885 -
Glsi04g1384 883 NCBIfam pentatricopeptide repeat 703 736 IPR002885 -
Glsi04g1384 883 NCBIfam pentatricopeptide repeat 193 226 IPR002885 -
Glsi04g1384 883 Pfam PPR repeat 497 523 IPR002885 -
Glsi04g1384 883 Pfam PPR repeat 89 118 IPR002885 -
Glsi04g1384 883 Pfam PPR repeat 469 494 IPR002885 -
Glsi04g1384 883 Pfam PPR repeat 675 699 IPR002885 -
Glsi04g1384 883 Pfam PPR repeat 601 626 IPR002885 -
Glsi04g1384 883 FunFam Pentatricopeptide repeat-containing protein 38 138 - -
Glsi04g1384 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Glsi04g1384 883 Pfam E motif 818 880 IPR046848 -
Glsi04g1384 883 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 599 882 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1384 Glsi-ChrGlsi04 16268555 16271206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1384 195 882 Glycoside Hydrolase AT3G49170 31.534 5.47e-108 350