Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1351 ATGGATGCCAGGTTTTATGGCTTACCTCCCCTGAAGCGATTGAGGCTCATGCAACAGCAACAAGAGCTACAGAAACAGCAAGAGCACAAGCATATAAAGCAGGAAGAAGGCACTATTTTTTCCTGCTCCACCTTACCAGCGAAGAAGCGCAAGGAATCACGAGATTCAACATTTCTTCCTGACCCACCAGTTTCTACCTCTGCAGCTGCTTATTCGCTACCAGCTAAGAAAAGGGTATGGGCGCTTCAACCTGATTTTGCTTCCAATGTTGTTTTTTCTCCTATTGACCTCAATGTTGAATACAAACCATCTGTTGAGGAAGAGGTAAAAGCAGAGGCTGATGAACCCAATATTGGGATCCCGTTACTACCACATTCCCAGAATGGAACGGAAGAAAATGGACGTGGACATGTTGTGGGTGATACTGATGATAATGATGATGATGGGATTGTATGTGCTGTATGTCAAAGCACAGATGGAGACCCAGGAGATCCAATTGTCCTCTGTGATGGGTGTGATCTAATGGTGCACGCCTCCTGCTATGGCAATCCCCTTGTAAAGGGTATACCAGAAGGTGATTGGTTTTGTGAACAATGCCTGGTTTCATCGTCTTCACAAACTAAGAAAGACGAGAAGGGTTTTTCTTGCTGTCTCTGTCCAATAAAAGAAGGGGCAATGAAACCCACCACGGATGAACGGTGGGCGCATATTGTCTGTGCTCTTTTAGTCCCTGAGGTGTATTTTGGGGACCCAGAAGGACGAGAGGGAATTGATTGTTCTAAGGTTCCCAAAAAGAGATGGTCAGAGAAATGTTATATTTGCAAATCTTCAAATGGGTGTGCTATTGCGTGTTCGGAGCACAAATGTCCTTTGGCCTTCCATGTTACTTGTGGGTTGAAAGAGGATCTTAGCATTGAGTACAAAGAAGGGAAGAAGGGTGCTACTATCGTTGCTGGTTTCTGCAAAAGCCACACTGAGCTATGGAAAAAGCAACAACAATCAGGGAAATACAAAATTGTTGCTCGAGAAGAAATGATGTAG 1041 0.4448 MDARFYGLPPLKRLRLMQQQQELQKQQEHKHIKQEEGTIFSCSTLPAKKRKESRDSTFLPDPPVSTSAAAYSLPAKKRVWALQPDFASNVVFSPIDLNVEYKPSVEEEVKAEADEPNIGIPLLPHSQNGTEENGRGHVVGDTDDNDDDGIVCAVCQSTDGDPGDPIVLCDGCDLMVHASCYGNPLVKGIPEGDWFCEQCLVSSSSQTKKDEKGFSCCLCPIKEGAMKPTTDERWAHIVCALLVPEVYFGDPEGREGIDCSKVPKKRWSEKCYICKSSNGCAIACSEHKCPLAFHVTCGLKEDLSIEYKEGKKGATIVAGFCKSHTELWKKQQQSGKYKIVAREEMM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1351 346 ProSiteProfiles Zinc finger PHD-type profile. 149 202 IPR019787 -
Glsi04g1351 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 212 IPR013083 -
Glsi04g1351 346 PANTHER PHD FINGER PROTEINS 93 325 - -
Glsi04g1351 346 Pfam PHD-finger 151 200 IPR019787 -
Glsi04g1351 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 327 IPR013083 -
Glsi04g1351 346 ProSiteProfiles Extended PHD (ePHD) domain profile. 213 325 IPR034732 -
Glsi04g1351 346 SUPERFAMILY FYVE/PHD zinc finger 142 205 IPR011011 -
Glsi04g1351 346 MobiDBLite consensus disorder prediction 23 63 - -
Glsi04g1351 346 Pfam PHD-zinc-finger like domain 215 324 - -
Glsi04g1351 346 SMART PHD_3 151 200 IPR001965 -
Glsi04g1351 346 SMART PHD_3 270 325 IPR001965 -
Glsi04g1351 346 Coils Coil 16 36 - -
Glsi04g1351 346 CDD PHD_BRPF_JADE_like 151 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1351 Glsi-ChrGlsi04 15462767 15464162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1351 20 344 C2H2 Transcription Factor Family AT3G14740 57.831 1.75e-128 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi04g1351 zf-HC5HC2H_2 6.6e-30 CL0390