Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1338 ATGCCTGGGAATAAGTATAACGGTAATTCTCATCATTTTCCGGGTCGTGTTGAACGACTACTAAGAGAAAGAGAGCTAAGAAAAAGCAGCCGCGCTTATTATTTGAATGAGTCTACTGATAATAATGATAGGATTACTCTACCTTTTGAGCATGACCAACGCTTAAGAGACGATAATAACTCGGGTGCTTCCTATATTGAACGATTCCTGGAAGAGGCTGCAGTGGCAAGAGCGCATAGTGAGGGATGCGAAAGGCAAGATGGGAGGCCTTTTAGACAAAGACTTTTGGTGGTGGCAAACAGGCTGCCAGTCTCAGCAGTCAGGAGAGGTGAAGACTCATGGTCTCTGGAGATAAGCGCCGGTGGTCTTGTGAGCGCTCTTTTAGGTGTGAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCTGGTGTCAATGTGCCAGATGAGATTGGACAGAAAGCACTTACCAAAGCTTTGGCTGAAAAGATGTGTATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTACTGCAACAACATCCTGTGGCCCCTTTTCCATTACCTTGGACTTCCACAAGAAGATCGCCTTGCCACTACAAGGAGTTTCCAGTCTCAGTTTGCAGCATATAAGAAGGCAAATCAAATGTTTGCTGATGTTGTGAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTCATGTTTCTTCCAAAATGCTTAAAGGAATATAACAGCAAAATGAAAGTTGGCTGGTTTCTTCACACACCATTTCCATCTTCAGAAATTCATAGGACACTGCCCTCACGTTCAGAGCTCCTGCATTCTGTTCTTGCAGCTGATTTAGTTGGTTTTCACACCTATGATTATGCACGACATTTTGTTAGTGCTTGTACTCGCATCCTTGGACTTGAGGGTACGCCTGAAGGGGTTGAGGATCAAGGGAGGGTGACTCGAGTTTCTGCATTTCCTATTGGGATAGACTCGGATCGATTCATATGTGCACTTGAGCTTCCTCAAGTTCAGGACCACATGAAAGAATTACAAGAAAGATTTAAAGGCAGGAAGGTAATGTTAGGTGTTGATCGGCTTGATATGATTAAAGGAATTCCTCAGAAAATTCTAGCTTTTGAAAAATTTCTGGAAGAGAATGCTTATTGGCGTGATAAAGTAGTTTTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATTAATGGCAGATTTGGATCATTGACTGCTGTTCCCATACATCACCTGGATCGCTCTCTTGACTTTCATGCACTATGTGCTTTGTATGCTGTAACTGATGTAGCCCTTGTCACATCTTTAAGGGATGGGATGAATCTTGTCAGTTACGAATATGTGGCCTGCCAGGACAGAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCTGCACAGTCTTTAGGTGCTGGAGCAATTTTGGTTAATCCCTGGAACATCACAGAAGTTGCTGCTGGAATTGCCCAGGCTCTGAATATGCCATCTGGGGAAAGAGAGAAGCGACATACACATAACTTTTCACATGTCAAATCCCACACTGCTCAGGAATGGGCAGAAACTTTCGTAAGCGAACTAAATGATACTGTTGTGGAGGCACAACTAAGGACAAGACAAGTGCCACCCCCACTTCCAACGAAGACTGCGATTGAACGTTATCTGCAGTCAACTAATCGATTGATCATTTTGGGTTTCAATGCAACTTTAACTGAACCAGTCGAGAAAAAAGGTGATCAAATTAAAGAAATGGAACTAAAGGTGCATCCAGAATTAAAACAACCATTGACAGAACTTTGCAGTGACCCAAAGACGACTGTTGTTGTTCTTAGTGGAAGTGGTAGAACAGTCTTAGAGGAGAACTTTAGGGAGTATGACATGTGGTTGGCAGCAGAGAATGGGATTTTTTTACACCCTGCAAAGGGAGAATGGATGACAACAATGCCAGAGCTTCTGAACATGGAATGGGTTGACAGTGTGAAGCATGTTTTGGAGTACTTCACAGAAAGAACGCCCCGGTCACATTTTGAAGAACGGGAAACTTCTCTCGTCTGGAATTACAAATATGCAGATATTGAATTTGGAAGACTTCAAGCAAAGGACATGCTACAGCATCTCTGCACAAGTCCAATCTCTAATGCGTCAGTTGAGGTCGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTAATGTTACAAAGGGAGCAGCTATTGACCGCATCCTGGGTGAGATAGTACATAGTAAATCCATGACCTCACCAATTGATTATGTCCTGTGTATAGGACATTTTCTGGGAAAGGACGAAGATGTTTATGCCTTTTTTGAGCCAGAGCTTCCTTCTGTTGGTATGGCTCTTCCACGAACAAAGGTAACAGATGGAGTCAAGTTTCCTGTTGAGAGGAGATCGTCTCTGAAGATTCCAGCCAGTAAAAGTGGACCAAAGTCATCTCAAAGTAAGACACAAAAGCCTCTATCGAATTCTGAGAAGAAAACAAATCATATCTGTAGTTCGCCACGGCGTCCAATTCCAGAAAAGATTTCATGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTCTCCTGTGCTGTTGGACGAACTCGAACAAATGCTCGGTATACACTTGGATCATCAGATGATGTTGTTGCATTTCTGAAGGAACTGGCAGATGCATCTTTCAACTCTTCATCATCGAATTGA 2793 0.4304 MPGNKYNGNSHHFPGRVERLLRERELRKSSRAYYLNESTDNNDRITLPFEHDQRLRDDNNSGASYIERFLEEAAVARAHSEGCERQDGRPFRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKMCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNSKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRVTRVSAFPIGIDSDRFICALELPQVQDHMKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEYVACQDRKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAGIAQALNMPSGEREKRHTHNFSHVKSHTAQEWAETFVSELNDTVVEAQLRTRQVPPPLPTKTAIERYLQSTNRLIILGFNATLTEPVEKKGDQIKEMELKVHPELKQPLTELCSDPKTTVVVLSGSGRTVLEENFREYDMWLAAENGIFLHPAKGEWMTTMPELLNMEWVDSVKHVLEYFTERTPRSHFEERETSLVWNYKYADIEFGRLQAKDMLQHLCTSPISNASVEVVQGSRSVEVRAVNVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDVYAFFEPELPSVGMALPRTKVTDGVKFPVERRSSLKIPASKSGPKSSQSKTQKPLSNSEKKTNHICSSPRRPIPEKISWNVLDLKKENYFSCAVGRTRTNARYTLGSSDDVVAFLKELADASFNSSSSN 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1338 930 Pfam Glycosyltransferase family 20 94 559 IPR001830 GO:0003824|GO:0005992
Glsi04g1338 930 Gene3D Glycogen Phosphorylase B; 341 544 - -
Glsi04g1338 930 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 94 559 IPR012766 GO:0003825|GO:0005992
Glsi04g1338 930 Gene3D - 681 761 - -
Glsi04g1338 930 Gene3D - 615 775 IPR023214 -
Glsi04g1338 930 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 681 761 - -
Glsi04g1338 930 CDD HAD_TPP 592 809 - -
Glsi04g1338 930 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 86 340 - -
Glsi04g1338 930 Pfam Trehalose-phosphatase 614 812 IPR003337 GO:0003824|GO:0005992
Glsi04g1338 930 MobiDBLite consensus disorder prediction 840 864 - -
Glsi04g1338 930 SUPERFAMILY HAD-like 591 920 IPR036412 -
Glsi04g1338 930 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 86 921 IPR001830 GO:0003824|GO:0005992
Glsi04g1338 930 MobiDBLite consensus disorder prediction 837 872 - -
Glsi04g1338 930 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 562 - -
Glsi04g1338 930 Gene3D Glycogen Phosphorylase B; 86 340 - -
Glsi04g1338 930 CDD GT20_TPS 94 559 IPR001830 GO:0003824|GO:0005992
Glsi04g1338 930 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 341 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1338 Glsi-ChrGlsi04 15233001 15246678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1338 1 923 Trehalose Biosynthesis Gene Families AT1G78580 78.875 0.0 1493