Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1336 ATGGCATTCTTCTGTCTTTGTTTCGATATTGTTCTTCTACTACCAGCCATGGAAGCTTGTAATCTTTTTAGCGACATAATGCGGCCCTCTTCATCATCTTCTCCAGATGATTCGATGCTGCCACAGAATATTACAAGTTCAACCGAAGAAGAGATTAATGTATACTTGAAGATCATGAAAACAGTGCCTTTGAAGGTTAACAGGTCCGACACGGTTAAAAATCTAAAGGCCATGCTGCATGAAAAGTATGGACTTTGTGAAAAAAGTCAGCAACTCTTTTTCACTGGTGAAAGACTTTTAGACAACCAGACACTTGTTGACTGTGGCATTGAAAAGGATTCTACTCTCGACCTCATTGTGCAGAGTTTTGAAAGAATAAGAATATTTATCAAATTACTCTCCTATCAGAGAACTATTGTTGTGGAAGCTAGAATTATTGATACTATCAAGAACATCAAAACAATGTTTCAGACCATGGAGGGAATGCAGTCAGACGATTTCACACTCACTTATGATGGAAAAGTACTCAAAGATGACAGCACTATATCTTCTCTCAAAGTGCATAGTGGCTCCATGTTTTATTTGCTGTCAACGCCAAAAGAAGTGCTACCAATTTATGCCAGAACACCAAACGGGCACACTGTCAAACTTGAAGTTAAGGTTGTGTTCGCCATTCAAGATGTGAAAGCAATGGTCGGAAGCATGGCAGGCATTGATTTGAGTGACTGGACTTTATCATTTGCTGGAAAGCAGCTTAAGGAATGGCAGACCTTGGCTTACTATGGCATCAAAGAAGGATCGGTGTTAGACATGTCGCCCAAAATTCATCAGATATTTGTCAAGACTTTTTGTGGGAAGACTATAACTCTTGTTTTTTATCAATCTGACACTGTTAAAACTGTGACCAGGAAGATTTTGGAAAAGATGAAGTTACCTACACCCTCTTGTCCATTGAAGTTTTCATTTGCTGGAAGGCGACTTGAAGATGGCCGGACCCTAGCAAGTTACTCAATCCAAAAGGACTCCACACTTCATGCATTTTTTTAG 1047 0.3954 MAFFCLCFDIVLLLPAMEACNLFSDIMRPSSSSSPDDSMLPQNITSSTEEEINVYLKIMKTVPLKVNRSDTVKNLKAMLHEKYGLCEKSQQLFFTGERLLDNQTLVDCGIEKDSTLDLIVQSFERIRIFIKLLSYQRTIVVEARIIDTIKNIKTMFQTMEGMQSDDFTLTYDGKVLKDDSTISSLKVHSGSMFYLLSTPKEVLPIYARTPNGHTVKLEVKVVFAIQDVKAMVGSMAGIDLSDWTLSFAGKQLKEWQTLAYYGIKEGSVLDMSPKIHQIFVKTFCGKTITLVFYQSDTVKTVTRKILEKMKLPTPSCPLKFSFAGRRLEDGRTLASYSIQKDSTLHAFF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1336 348 PANTHER UBIQUITIN 277 346 - -
Glsi04g1336 348 Gene3D - 123 202 - -
Glsi04g1336 348 CDD Ubl_ubiquitin_like 52 119 - -
Glsi04g1336 348 SUPERFAMILY Ubiquitin-like 188 274 IPR029071 -
Glsi04g1336 348 ProSiteProfiles Ubiquitin domain profile. 203 271 IPR000626 GO:0005515
Glsi04g1336 348 SMART ubq_7 52 121 IPR000626 GO:0005515
Glsi04g1336 348 SMART ubq_7 126 198 IPR000626 GO:0005515
Glsi04g1336 348 SMART ubq_7 276 348 IPR000626 GO:0005515
Glsi04g1336 348 SMART ubq_7 203 274 IPR000626 GO:0005515
Glsi04g1336 348 Pfam Ubiquitin family 60 120 IPR000626 GO:0005515
Glsi04g1336 348 Pfam Ubiquitin family 278 346 IPR000626 GO:0005515
Glsi04g1336 348 Pfam Ubiquitin family 128 196 IPR000626 GO:0005515
Glsi04g1336 348 Pfam Ubiquitin family 208 271 IPR000626 GO:0005515
Glsi04g1336 348 Gene3D - 52 122 - -
Glsi04g1336 348 Gene3D - 203 272 - -
Glsi04g1336 348 PRINTS Ubiquitin signature 81 101 IPR019956 -
Glsi04g1336 348 PRINTS Ubiquitin signature 102 123 IPR019956 -
Glsi04g1336 348 PRINTS Ubiquitin signature 60 80 IPR019956 -
Glsi04g1336 348 Gene3D - 275 348 - -
Glsi04g1336 348 ProSiteProfiles Ubiquitin domain profile. 52 121 IPR000626 GO:0005515
Glsi04g1336 348 SUPERFAMILY Ubiquitin-like 274 347 IPR029071 -
Glsi04g1336 348 SUPERFAMILY Ubiquitin-like 126 196 IPR029071 -
Glsi04g1336 348 ProSiteProfiles Ubiquitin domain profile. 276 348 IPR000626 GO:0005515
Glsi04g1336 348 SUPERFAMILY Ubiquitin-like 43 120 IPR029071 -
Glsi04g1336 348 CDD Ubl_ubiquitin_like 128 196 - -
Glsi04g1336 348 ProSiteProfiles Ubiquitin domain profile. 126 196 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1336 Glsi-ChrGlsi04 15150882 15153369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1336 277 345 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 56.522 2.44e-16 73.2