Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1328 ATGAAGCTTCAGTGCAACGTGTGTGAGGCGGCGGAGGCGGAGGTTCTCTGCTGTGCCGACGAGGCGGTGCTATGTCGGCAATGTGACGAGAAGATTCATACAGCTAACAAGCTAGTCAGCAAGCACCAGAGGGTTCCTCTTTCTACCTCTTCCTCTCAGATGCCCAAATGTGATATTTGTCAGGACTCAGTTGGCTATTTCTTCTGTCTAGAGGACCGGGCTTTACTCTGCAGAAAATGTGATGTGGCAATTCACACAGCAAATTCCTATGTCTCCACTCATCAGAGGTTTCTGCTCACAGGTGTAAGAGTAGGTCTTGAAGCTACTGAGCCCGGTGCTTCCTCATCTGCTGCAAAGTCACATTCTGGGGGGAAAATGTCAGATACAGTATCTTCTACTGTCTCTAGGAAGGTTTCCACAATCCCTCTGTCATCTGAATACAATGAAGTGTCACCCATCCAAGTTGGGGAGTTTCAACCAACCAAGGTGTGTTATGGTGGTGGTTCTACTGCTGGAAACATCGCAAACTGGCCCTTCGATGAATTTTTTGGGCTAAATGAATTCAGTCAAAATTATAATTACATGGATAATGGACCATCCAAGGCTGACAGCGGTAAACTTGGGGATTCTGACTCTTCTTTTCTAAGATCTAGTGAAGAGGAAATGGATAATGATGACCACTTGGCATGGGTTCCAGATTCATCCTGGACAGTTCCTCACGTCCCTTCCCCTCCTACGGCTTCAGGGTTATCTTGGCCGAAAGCCCCTCAATATTCATCTACCGACAGTGCTCTGTTTGTTCCTGACATATGCTCATCTCACATCCAACAGCCCCACCATGTTCAAAAAAATAGTACATCATCAAAGCGGCGAAGACAACTTTAA 885 0.4655 MKLQCNVCEAAEAEVLCCADEAVLCRQCDEKIHTANKLVSKHQRVPLSTSSSQMPKCDICQDSVGYFFCLEDRALLCRKCDVAIHTANSYVSTHQRFLLTGVRVGLEATEPGASSSAAKSHSGGKMSDTVSSTVSRKVSTIPLSSEYNEVSPIQVGEFQPTKVCYGGGSTAGNIANWPFDEFFGLNEFSQNYNYMDNGPSKADSGKLGDSDSSFLRSSEEEMDNDDHLAWVPDSSWTVPHVPSPPTASGLSWPKAPQYSSTDSALFVPDICSSHIQQPHHVQKNSTSSKRRRQL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1328 294 CDD Bbox1_BBX-like 5 47 - -
Glsi04g1328 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Glsi04g1328 294 SUPERFAMILY B-box zinc-binding domain 45 94 - -
Glsi04g1328 294 MobiDBLite consensus disorder prediction 113 131 - -
Glsi04g1328 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 273 - -
Glsi04g1328 294 MobiDBLite consensus disorder prediction 196 224 - -
Glsi04g1328 294 SMART bboxneu5 1 47 IPR000315 GO:0008270
Glsi04g1328 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Glsi04g1328 294 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Glsi04g1328 294 Gene3D Classic Zinc Finger 1 93 - -
Glsi04g1328 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Glsi04g1328 294 CDD Bbox1_BBX-like 56 99 - -
Glsi04g1328 294 MobiDBLite consensus disorder prediction 275 294 - -
Glsi04g1328 294 MobiDBLite consensus disorder prediction 112 131 - -
Glsi04g1328 294 FunFam B-box zinc finger protein 22 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1328 Glsi-ChrGlsi04 15096557 15099785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1328 1 294 C2C2-CO-like Transcription Factor Family AT1G78600 44.880 2.23e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi04g1328 zf-B_box 2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1328 04 15096557 15099785 Glsi04g1328 04 15096557 15099785 ECH