Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1327 ATGTCATCTTCTTCCTATGAAGTTGTCCTTACTAGCTCTCCTGATGGCCTAATCTTGGTCTATGAAGCTTCCACAGGCAACACCGTTGCCCGTTTCACTGGCAGCCGGTCGCCCCGCCGGGGCCTCACTGTGGTTGGAAAGTGTTTGATTGCTGCCTCTCATGTGTCCCCGGACACAGATGCAGTGTCAATTCACCTCTACAATTGGTATACTTCAACTGTGTTCTATAGCTTCCCTGTTCCTGAATTTGTTGCCCCACTCACTGCTACTTCTGACGGTGCCTATCTCTTCGCCGGTGGCATATCAGGGAGTGTTCATTCTTTCTCACTGCCTTTTGGGGATATAGTAAGATCTTTCCCTGCTCACAGAAAACCCATTTCTTGCCTCCTACTTAGTGACGATGGTTCGCTGCTAATTTCAGGTAGTGAAGATGGTAGCATAGTTGTGATCCCAACCTTCCAAGTTGTAGAAACCTCATCAACTGAAGAAGACCCAAAAGATTCGATCTTGCACCAATTGAAGGCACATTCAGATTCAGTCACTGCCTTGAGCTCTGGAATAGGCCTATGCAACTCTACCTTAATCTCTTGCTCACTAGACTGCACATGCAAGTTCTGGAATTTGGTAGATGGAACCGTCCTACGCACAGTGTCATTCCCTTGTGCCATTTTTGGGATTGCCATAGACTCAGCAGAATCGGATTTCTACGCAGCTGGGTCAGATGGGATGGTCTATAAAGGATCAATGAAGGTTGGAAGCAGAAAACTACTAAGCAAAGCTCATGAACTCGTCACTTGGAATAATCAAAGCCATAATGGGTCAGTTGTATCTGTGGTTCTGGTGAATGAAGGGAAGAACTTGGTGTCTGCTTCTGAAGATGGGAGTGTGTGGATGTGGGAAGTGGAGAAAGAAGAAGTGGCTATGGTTCTGGGGAATAATAGTGTAATGGGAAGCATTAGTGATATGATAGTGGCTAGAGGCACAGAGTATAGAGGAAGAGGGAGAAATGGTGGGGGTGGTGGAAACTTTAGTCTAGGGCTATGTGAGGAAGAGGTGGTTAGGTCTATGAAGAAAATCCTGGAGCTTGGAGATATTTTGAGTGTGGTGGTTGAAGATAGGAAAAGAGCCATTGACATGCTGGAATCTGCTATTGCTGTGTACGAAAGGCTCTTGGAGCTTATTCTTGAGGAAGCTTTGAAAGGCACCAGCAGCACCGGTGAGGAGGTGGAGAAAGAAGAGAAAGAGGACAAGTAA 1254 0.4641 MSSSSYEVVLTSSPDGLILVYEASTGNTVARFTGSRSPRRGLTVVGKCLIAASHVSPDTDAVSIHLYNWYTSTVFYSFPVPEFVAPLTATSDGAYLFAGGISGSVHSFSLPFGDIVRSFPAHRKPISCLLLSDDGSLLISGSEDGSIVVIPTFQVVETSSTEEDPKDSILHQLKAHSDSVTALSSGIGLCNSTLISCSLDCTCKFWNLVDGTVLRTVSFPCAIFGIAIDSAESDFYAAGSDGMVYKGSMKVGSRKLLSKAHELVTWNNQSHNGSVVSVVLVNEGKNLVSASEDGSVWMWEVEKEEVAMVLGNNSVMGSISDMIVARGTEYRGRGRNGGGGGNFSLGLCEEEVVRSMKKILELGDILSVVVEDRKRAIDMLESAIAVYERLLELILEEALKGTSSTGEEVEKEEKEDK 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1327 417 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Glsi04g1327 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Glsi04g1327 417 ProSitePatterns Trp-Asp (WD) repeats signature. 194 208 IPR019775 -
Glsi04g1327 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Glsi04g1327 417 SMART WD40_4 112 151 IPR001680 GO:0005515
Glsi04g1327 417 SMART WD40_4 166 207 IPR001680 GO:0005515
Glsi04g1327 417 SMART WD40_4 259 300 IPR001680 GO:0005515
Glsi04g1327 417 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 8 305 IPR011047 -
Glsi04g1327 417 Coils Coil 377 397 - -
Glsi04g1327 417 Pfam WD domain, G-beta repeat 169 207 IPR001680 GO:0005515
Glsi04g1327 417 Pfam WD domain, G-beta repeat 114 149 IPR001680 GO:0005515
Glsi04g1327 417 Gene3D - 2 159 IPR015943 GO:0005515
Glsi04g1327 417 PANTHER WD-REPEAT PROTEIN 18 7 330 IPR045227 -
Glsi04g1327 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 216 IPR001680 GO:0005515
Glsi04g1327 417 Gene3D - 160 325 IPR015943 GO:0005515
Glsi04g1327 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1327 Glsi-ChrGlsi04 15048692 15050869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1327 99 303 U-box Gene Family AT1G04510 26.291 2.54e-09 57.0