Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1325 ATGGCCCTACTCTGTGGTTCAACTTCGGCGACGTTCCCTTCATCTTCAGCTAAATCTTCGTTTATTTCTCACAAGAATGCAAATGCCAAAACCCCATTTGTTGGGTTCCAATTGGCATCATTAAAGCCTTCTGTACGGACCAATCTGCCTCTCAATTCTCGGCGAAGTTTTCAGGTCCGTTGTCAGGACCTCTCCATTGTCCCAAAAGATGAACGTTGGATGTTCGAGGAATCCGAAGTCAATGGCCCGGACATTTGGAACAAGACTTGGTATCCGAAAGCTGCAGATCATGTAAATACCGATAAACCATGGTATATTGTTGATGCTACGGACAAAGTTCTTGGAAGACTAGCATCAACAATTTCTATTTATATCCGAGGGAAAAATTTGGCGACCTATACTCCTAGTGTTGATATGGGTGCATTTGTAATTGTGGTTAATGCAGAAAAAGTTGCTGTGTCTGGAAAAAAGAGGACCCAAAAGCTTTATAGGAGGCATTCCGGACGACCTGGTGGTATGAAAGTAGAAACATTTGCCCAACTACAGCAGAGAATTCCAGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCTAAAGGGAGGCTTGGCAGACAACTGTTCAACCACCTGAAGGTTTATAAGGGCCCCGATCATCCACACGAGGCTCAGAAGCCGATCGAGTTACCAATAAGGGACAAAAGAATACAACTGCTGAGATAG 723 0.4398 MALLCGSTSATFPSSSAKSSFISHKNANAKTPFVGFQLASLKPSVRTNLPLNSRRSFQVRCQDLSIVPKDERWMFEESEVNGPDIWNKTWYPKAADHVNTDKPWYIVDATDKVLGRLASTISIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQQRIPERIIEHAVRGMLPKGRLGRQLFNHLKVYKGPDHPHEAQKPIELPIRDKRIQLLR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1325 240 SUPERFAMILY Ribosomal protein L13 98 232 IPR036899 GO:0003735|GO:0005840|GO:0006412
Glsi04g1325 240 Pfam Ribosomal protein L13 103 220 IPR005822 GO:0003735|GO:0005840|GO:0006412
Glsi04g1325 240 Hamap 50S ribosomal protein L13 [rplM]. 104 230 IPR005822 GO:0003735|GO:0005840|GO:0006412
Glsi04g1325 240 Gene3D Ribosomal protein L13 93 236 IPR036899 GO:0003735|GO:0005840|GO:0006412
Glsi04g1325 240 ProSitePatterns Ribosomal protein L13 signature. 194 216 IPR023563 GO:0003735|GO:0005840|GO:0006412
Glsi04g1325 240 CDD Ribosomal_L13 104 217 IPR005822 GO:0003735|GO:0005840|GO:0006412
Glsi04g1325 240 NCBIfam 50S ribosomal protein L13 98 229 IPR005823 GO:0003735|GO:0005840|GO:0006412
Glsi04g1325 240 PANTHER RIBOSOMAL PROTEIN L13 90 235 IPR005822 GO:0003735|GO:0005840|GO:0006412
Glsi04g1325 240 FunFam 50S ribosomal protein L13 87 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1325 Glsi-ChrGlsi04 15015621 15020035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1325 106 230 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 29.545 4.54e-06 44.3