Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1313 ATGTGGCTTTGGTTAAAGGGGTTACCTCACGTTCTTGCAATGGGGATGATGGATTCAAAAACAAGACTATTAAAGGGGATCCCATCAAAGCTGAAGAGTCTCAATCTATCTGGAGTTTTGCCTGGTGAATTTGGAAATCTCAGTCACCTGACAGAACTGTCCCTTTCGGGTAATCAAATTAGTGGTTCAATTCCGAAGGAAATTGGCAATTTTGCCAGTTTGGAGGAGCTGGAATTGGAAGATAATCTGTTAGAAGGAACTCTTCCTCCCAATCTTGGAAATTTGAAGCGGTTACGGAGATTACTTCTTTCTGCGAATAATTTCTCAGGGACAATACCAGAAACTTTTGGCAACCTAAAGGAACTAAAAGATTTTAGGATAGATGGAAGCAGAATGTCAGGAAAAATACCCAGTTTTATTGGGAATTGGACCAAACTTGGAAGACTTGATCTGCAAGGCACATCCCTGGAAGGTCCAATTCCTCCCACCATAGCAAAGCTGACAAATTTGACTCAACTGAGAATAACTGATTTGAATGGACCAACTATGAAATTTCCTGATCTGAAGAATTTGAAAGCCTTCCAATATTTGGTGTTGAGGAATTGTTCAATTACTGGTCCCATTCCAGAATACATCGGTCACATGGAAAGCTTAGATACTCTAGACCTGAGCTTCAACAGGTTGACTGGTAAAATCCCAGATACAATAGAAAGCTTGACAAAGTTAGAATATATCTTTCTGGCTGACAATTCTTTGAGTGGAGCAATTCCAGGATGGCTTGTCAGCTCAACGATGTTGATTTGTGATGAGGTTTTCACGATCTCTGCAGATTATTCATTGTTCATCAACTGTGGAGGATCTGAAATGAAATTTGAGGGGAATCAATATGAAGAGGACCTCAGTCGAGAGGGCATATCAAACTTTGTTCATAAAGATGACAAATGGGCTTATAGCAGCACAGGAGTATATATGGGAAAAGATAAAGCTGATTACGTAGCAACAAATACATTTTCTCTGAATATTACTGGTCCTGAGTATTACCAAACAGCCCGCCTTTCCCCTGCGTCACTTAGGTATCTTGGCCTTTGTATGCTCAAGGGAAATTATAAAGTGAAGCTCCACTTTGCCGAGATAATGTATTCTGATGATCAGACATTTAGCAGCCTTGGAAGGCGTATATTTGATGTTTCAATTCAAGGTGTACTGTCAGATGGTGCTGCCATTGCTGTCAAGCAGCTCTCCTCAAAATCAAAGCAAGGGAACCGTGAATTTGTTAATGAAATAGGAATGATATCTGCTTTGCAACACCCAAACCTTGTGAAGCTTTTTGGCTGCTGCATTGAAGGAAATCAGTTGTTGCTAATATATGAGTACATGGAGAACAATAGTCTTGCCCGTGCACTTTTTGGTCATCAGGAACAGAGGCTACACTTGAATTGGCCCACAAGAATGAAAATTTGTTTGGGGATAGCAAGGGGATTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATTGTACACAGGGACATTAAGGCAACAAATGTCTTACTTGATAAGGATTTGAATGCCAAAATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAGGAGAATACCCATATCAGCACCAGAATAGCAGGAACAATTGGTTACATGGCTCCTGAATATGCTATGCGGGGTTATTTGACTGACAAGGCGGATGTTTATAGCTTTGGAGTTGTTGTTTTAGAGATTGTTAGCGGAAAAAGTAACACTAGTTACCGGCCAAAAGAGGACTTTGTCTATCTTCTTGATTGGGCCTATGTTCTTCAAGAGCAAGGAAATCTTCTGGAATTGGTGGATCCAAGTCTTGGTTCAAGCTACTCCTCGGAGGAAGCCATGAGAATGCTAGAGTTGTCGCTCTTATGTACCAATCCATCTCCCACTCTTAGACCATCCATGTCATCTGTAGTTAGCATGCTCGAAGGAAAATCTCCAATCCAAGCACAGATAATTAAGCACCAGGAGGCAGGCCAAGATGCAAGATTCAGAGCCTTTGATATGTGA 2046 0.4096 MWLWLKGLPHVLAMGMMDSKTRLLKGIPSKLKSLNLSGVLPGEFGNLSHLTELSLSGNQISGSIPKEIGNFASLEELELEDNLLEGTLPPNLGNLKRLRRLLLSANNFSGTIPETFGNLKELKDFRIDGSRMSGKIPSFIGNWTKLGRLDLQGTSLEGPIPPTIAKLTNLTQLRITDLNGPTMKFPDLKNLKAFQYLVLRNCSITGPIPEYIGHMESLDTLDLSFNRLTGKIPDTIESLTKLEYIFLADNSLSGAIPGWLVSSTMLICDEVFTISADYSLFINCGGSEMKFEGNQYEEDLSREGISNFVHKDDKWAYSSTGVYMGKDKADYVATNTFSLNITGPEYYQTARLSPASLRYLGLCMLKGNYKVKLHFAEIMYSDDQTFSSLGRRIFDVSIQGVLSDGAAIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLFGCCIEGNQLLLIYEYMENNSLARALFGHQEQRLHLNWPTRMKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVVLEIVSGKSNTSYRPKEDFVYLLDWAYVLQEQGNLLELVDPSLGSSYSSEEAMRMLELSLLCTNPSPTLRPSMSSVVSMLEGKSPIQAQIIKHQEAGQDARFRAFDM 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1313 681 ProSiteProfiles Leucine-rich repeat profile. 217 240 IPR001611 GO:0005515
Glsi04g1313 681 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 185 272 - -
Glsi04g1313 681 Gene3D Phosphorylase Kinase; domain 1 369 458 - -
Glsi04g1313 681 FunFam Os04g0616200 protein 398 459 - -
Glsi04g1313 681 Pfam Malectin domain 279 402 IPR021720 -
Glsi04g1313 681 SUPERFAMILY Protein kinase-like (PK-like) 376 655 IPR011009 -
Glsi04g1313 681 Gene3D Transferase(Phosphotransferase) domain 1 459 676 - -
Glsi04g1313 681 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 113 179 - -
Glsi04g1313 681 FunFam Putative LRR receptor-like serine/threonine-protein kinase 459 666 - -
Glsi04g1313 681 ProSiteProfiles Protein kinase domain profile. 383 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1313 681 SMART serkin_6 380 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1313 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Glsi04g1313 681 Pfam Protein tyrosine and serine/threonine kinase 405 653 IPR001245 GO:0004672|GO:0006468
Glsi04g1313 681 CDD STKc_IRAK 400 656 - -
Glsi04g1313 681 SUPERFAMILY L domain-like 31 265 - -
Glsi04g1313 681 Gene3D Ribonuclease Inhibitor 19 267 IPR032675 -
Glsi04g1313 681 Pfam Leucine rich repeat 34 84 IPR001611 GO:0005515
Glsi04g1313 681 Pfam Leucine rich repeat 195 252 IPR001611 GO:0005515
Glsi04g1313 681 FunFam Leucine-rich repeat receptor protein kinase EMS1 24 112 - -
Glsi04g1313 681 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 400 678 - -
Glsi04g1313 681 SMART LRR_typ_2 215 239 IPR003591 -
Glsi04g1313 681 SMART LRR_typ_2 47 71 IPR003591 -
Glsi04g1313 681 SMART LRR_typ_2 95 118 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1313 Glsi-ChrGlsi04 14547707 14557961 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1313 389 680 Receptor kinase-like Gene Family AT1G53440 78.644 1.95e-157 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g1313 PK_Tyr_Ser-Thr 5.3e-46 CL0016