Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1306 ATGTCACATGCAATTGCACCTTCCAAAGTGGCACCATTTGCCATCCAGCTGAAGAGTCTCAATCTATCTGGAGTTTTGCCTGGTGAATTTGAAAATCTCAGTCACCTGAAAGAACTGTCCCTTTCGGGTAATCAAATTAGTGGTTCAATTCCGAAGGAAATTGGCAATATTGCCAGTTTGGAGGAGCTGGAATTGGAAGATAATCTGTTAGAAGGAACTCTTCCTCCCAATCTTGGAAATTTGAAGCGGTTACGGAGATTACTTCTTTCTGCGAATAATTTCTCAGGGACAATACCAGAAACTTTTGGCAACCTAAAGGAACTAAAAGATTTTAGGATAGATGGAAGCAGAATGTCAGGAAAAATACCCAGTTTTATTGGGAATTGGACCAAACTTGGAAGACTTGATCTGCAAGGCACATCCCTGGAAGGTCCAATTCCTCCCACCATAGCAAAGCTGACAAATTTGACTCAACTGAGAATAACTGATTTGAATGGACCAACTATGAAATTTCCTGATCTGAAGAATTTGAAAGCCTTCCAATATTTGGTGTTGAGGAATTGTTCAATTACTGGTCCCATTCCAGAATACATCGGTCACATGGAAAGCTTAGATACTCTCTTTCTGGCTGACAATTCTTTGAGTGGAGCAATTCCAGGATGGCATCTTCTGCTGCAACTTGTCAGCTCAACGATGTTGATTTGTGATGAGGTTTTCACGATCTCTGCAGATTATTCATTGTTCATCAACTGTGGAGGATCTGAAATGAAATTTGAGGGGAATCAATATGAAGAGGACCTCAGTCGAGAGGGCATATCAAACTTTGTTCATAAAGATGACAAATGGGCTTATAGCAGCACAGGAGTATATATGGGAAAAGATAAAGCTGATTACGTAGCAACAAATACATTTTCTCTGAATATTACTGGTCCTGAGTATTACCAAACAGCCCGCCTTTCCCCTGCGTCACTTAGGTATCTTGGCCTTTGTATGCTCAAGGGAAATTATAAAGTGAAGCTCCACTTTGCCGAGATAATGTATTCTGATGATCAGACATTTAGCAGCCTTGGAAGGCGTATATTTGATGTTTCAATTCAAGGTACGAAATATTTGAGCAATTTTAACATTGTGAAGGAGGCTGGGGGCGTTGGTAAGGGATTTACCAAGGAATTTGACGTTGAAGTTAATAGCAGCACCTTGGAGATCCATTTATACTGGGCAGGGAAAGGAACTACTGCCATTCCTGACAGAGGTGTATATGGACCTCTTATATCTGCTATTTCAGTGACCCCAAACTTTAAAATTCCTTCAAAAGGGCTGTCTGCTGGAGCTATTGCAGGAATTGTGGCTGCATCATGTGTGCTCATCATACTGATACTGGCTGTCCTTCGAAAGATGGGTTTTCTGGGTGGGGAAGATCCAAAAGACAAAGAACTTCTAGATCTGAAAACGGGTTATTTCACTTTAAGACAAATTAAAGCTGCCACTGATAACTTTGACCCCGCAAATAAGATAGGTGAAGGAGGTTTTGGGCCAGTGTACAAGGGTGTACTGTCAGATGGTGCTGCCATTGCTGTCAAGCAGCTCTCCTCAAAATCAAAGCAAGGGAACCGTGAATTTGTTAATGAAATAGGAATGATATCTGCTTTGCAACACCCAAACCTTGTGAAGCTTTTTGGCTGCTGCATTGAAGGAAATCAGTTGTTGCTAATATATGAGTACATGGAGAACAATAGTCTTGCCCGTGCACTTTTTGGTCATCAGGAACAGAGGCTACACTTGAATTGGCCCACAAGAATGAAAATTTGTTTGGGGATAGCAAGGGGATTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATTGTACACAGGGACATTAAGGCAACAAATGTCTTACTTGATAAGGATTTGAATGCCAAAATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAGGAGAATACCCATATCAGCACCAGAATAGCAGGAACAATTGGTTACATGGCTCCTGAATATGCTATGCGGGGTTATTTGACTGACAAGGCGGATGTTTATAGCTTTGGAGTTGTTGGTTTAGAGATTGTTAGCGGAAAAAGTAACACTAGTTACCGGCCAAAAGAGGACTTTGTCTATCTTCTTGATTGGGCCTATAATGAGAAAGTGGACTACAAGACTACAGCGTCAAACAACTGA 2193 0.4113 MSHAIAPSKVAPFAIQLKSLNLSGVLPGEFENLSHLKELSLSGNQISGSIPKEIGNIASLEELELEDNLLEGTLPPNLGNLKRLRRLLLSANNFSGTIPETFGNLKELKDFRIDGSRMSGKIPSFIGNWTKLGRLDLQGTSLEGPIPPTIAKLTNLTQLRITDLNGPTMKFPDLKNLKAFQYLVLRNCSITGPIPEYIGHMESLDTLFLADNSLSGAIPGWHLLLQLVSSTMLICDEVFTISADYSLFINCGGSEMKFEGNQYEEDLSREGISNFVHKDDKWAYSSTGVYMGKDKADYVATNTFSLNITGPEYYQTARLSPASLRYLGLCMLKGNYKVKLHFAEIMYSDDQTFSSLGRRIFDVSIQGTKYLSNFNIVKEAGGVGKGFTKEFDVEVNSSTLEIHLYWAGKGTTAIPDRGVYGPLISAISVTPNFKIPSKGLSAGAIAGIVAASCVLIILILAVLRKMGFLGGEDPKDKELLDLKTGYFTLRQIKAATDNFDPANKIGEGGFGPVYKGVLSDGAAIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLFGCCIEGNQLLLIYEYMENNSLARALFGHQEQRLHLNWPTRMKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVGLEIVSGKSNTSYRPKEDFVYLLDWAYNEKVDYKTTASNN 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1306 730 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 471 574 - -
Glsi04g1306 730 Pfam Malectin domain 246 427 IPR021720 -
Glsi04g1306 730 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 716 - -
Glsi04g1306 730 ProSiteProfiles Protein kinase domain profile. 499 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1306 730 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 99 165 - -
Glsi04g1306 730 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 575 725 - -
Glsi04g1306 730 Gene3D Ribonuclease Inhibitor 12 228 IPR032675 -
Glsi04g1306 730 Gene3D Transferase(Phosphotransferase) domain 1 575 728 - -
Glsi04g1306 730 SUPERFAMILY L domain-like 16 227 - -
Glsi04g1306 730 SUPERFAMILY Protein kinase-like (PK-like) 483 711 IPR011009 -
Glsi04g1306 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Glsi04g1306 730 Pfam Leucine rich repeat 16 70 IPR001611 GO:0005515
Glsi04g1306 730 Gene3D Phosphorylase Kinase; domain 1 471 574 - -
Glsi04g1306 730 CDD STKc_IRAK 505 716 - -
Glsi04g1306 730 Pfam Protein tyrosine and serine/threonine kinase 503 712 IPR001245 GO:0004672|GO:0006468
Glsi04g1306 730 SMART serkin_6 499 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1306 730 Gene3D - 242 432 - -
Glsi04g1306 730 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 244 432 - -
Glsi04g1306 730 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 13 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1306 Glsi-ChrGlsi04 14098151 14108479 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1306 15 717 Receptor kinase-like Gene Family AT1G53440 58.638 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g1306 PK_Tyr_Ser-Thr 1.3e-48 CL0016