Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1297 ATGTACAGAAGGCCTCCAAGGTTGGATGCTGGTGTGAAGAGGTTAAATAAAACGAACGCTCCAAAATTTTTTACATGTGGAAGAAGAAAAAGAACAGCAGATAAAAATTCATTTTTGCAGTCATGCAAAGTGGGTAAATTTGATTTGGCGAATCTAGAATGGATCAACAAGATTCCACAGTGTCCAGTATTTCGCCCATCAGAACAGGAGTTTGAGGATCCTTTTGTTTATCTGCAGAAGATTGCTCCCGTGGCATGTAAATATGGAATATGCAAAATTGTTTCTCCCATAAATGCCTCTATTCCAGCCGCTGTTGTGTTAATGAAAGAAATAAAAGACTTCAAGTTTGAAACTCATGTACAGCCTCTTCGTCTTTCTAAATGGAATGAGAATGATGACATAACTTTTTCTCTAAGAGGCAGAAAATATACATATCGTGAGTTCGAGACTTTGGCAAACAAGGCCTTTCTGAATCGATTTTACAGTTATGGAGGGCTTCCTTCTTCGTATGTGGAAAAGGTGTTCTGGCATGAGATGGAGCATGGAGAGAAGGGAACAGTAGAGTATGGAGTCAACGTTGAAGGTAGTGCCTTCTCATGTGACCCTGATGACAAGCTTGGAAGAAGCAAGTGGAATTTGAAGAATTTCTCACGACTGCTGAAATCCACTTTGCAATTCATTGATAGAGAAATTCCAGGAATAACCGATCCCATGCTTTACATTGGAATGCTATTCAGCATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATTAACTATCATCACTCAGGTGCAAATAAAACTTGGTATGGAATTCCTGGTTATGCAGCCTCTCAATTTGAGAAGGTCGTTTTAGAGGATTTGTATTTCAATAAGAACTTATCAAAACATGGAGAGGATGGGGCCTTCCAAGTTCTTGCACAAAAAACAACCATGTTCCCTCCAAATGTCTTGCTGCAACATGATGTGCCAGTTTACAAAGCTGTGCAGAAGGCAGGGGAAGAGGCAGTAAACTTTGCTACTAGTGATTGGTTTCCACTAGGCGCTGCAGCTACCAGGCGTTATGCAAATCTTAGAATGCTGCCTATTATTCCATTTGAGGAACTTCTCTGTAAAGAGGCAATGCTAATTTATAAGTCCTCAAAAGTCAAAGTTTTGGAGAAGAAACCTAAAGATTTGGCATCCAGCCATGCTACTATGCTGTCTTTCATGCATCTTATCCATTCTTACAAGCAGGCCCTTGCAGGACTGAACAATTCAAGGGAGTTGTTCAGATCTTCGAATTCGCGAGACATTGAGTCAAAGACTTGCTCGTGTGGTAGACAATGTACTATTTTTGAGAGAGATGACATGTTGGCACTGAAAGATGCTGCCACAAGTTTCGAGCACCAAAAGGATATTCTGTTAAGTTCAGGATGA 1425 0.4042 MYRRPPRLDAGVKRLNKTNAPKFFTCGRRKRTADKNSFLQSCKVGKFDLANLEWINKIPQCPVFRPSEQEFEDPFVYLQKIAPVACKYGICKIVSPINASIPAAVVLMKEIKDFKFETHVQPLRLSKWNENDDITFSLRGRKYTYREFETLANKAFLNRFYSYGGLPSSYVEKVFWHEMEHGEKGTVEYGVNVEGSAFSCDPDDKLGRSKWNLKNFSRLLKSTLQFIDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGIPGYAASQFEKVVLEDLYFNKNLSKHGEDGAFQVLAQKTTMFPPNVLLQHDVPVYKAVQKAGEEAVNFATSDWFPLGAAATRRYANLRMLPIIPFEELLCKEAMLIYKSSKVKVLEKKPKDLASSHATMLSFMHLIHSYKQALAGLNNSRELFRSSNSRDIESKTCSCGRQCTIFERDDMLALKDAATSFEHQKDILLSSG 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1297 474 SMART JmjN_1 60 101 IPR003349 -
Glsi04g1297 474 Pfam jmjN domain 62 94 IPR003349 -
Glsi04g1297 474 ProSiteProfiles JmjC domain profile. 205 358 IPR003347 -
Glsi04g1297 474 ProSiteProfiles JmjN domain profile. 61 102 IPR003349 -
Glsi04g1297 474 Gene3D Cupin 61 404 - -
Glsi04g1297 474 Pfam JmjC domain, hydroxylase 238 336 IPR003347 -
Glsi04g1297 474 PANTHER LYSINE-SPECIFIC DEMETHYLASE 337 445 - -
Glsi04g1297 474 SMART cupin_9 205 358 IPR003347 -
Glsi04g1297 474 SUPERFAMILY Clavaminate synthase-like 136 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1297 Glsi-ChrGlsi04 13918308 13924028 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1297 44 382 JUMONJI Transcription Factor Family AT2G34880 31.742 1.86e-46 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi04g1297 JmjC 8.7e-25 CL0029