Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1295 ATGTACAGAAGGCCTCCAAGGTTGGATGCTGGGGTGAAGAGGTTAAATAAATCGAACGCTCCAAAATTTTTTAAATGTGGAAGAAGAAAAAGAACAGCAGATAAAAATTCACTTTTGAAGTCATGCAAAGTGGGTAAATTTGATATGGCGAATCTAGAATGGATCAACAAGATTCCACAGTGTCCAGTATTTCGCCCATCAGAACAGGAGTTTGAGGATCCTTTTGTTTATCTGCAGAAGATTGTTCCCGTGGCATGTAAATATGGAATATGCAAAATTGTTTCTCCTATAAATGCCTCTATTCCAGCCGCTGTTGTGTTAATGAAAGAAATAAAAGACTTCAAGTTTGAAACTCATGTACAGCCTCTTCGTCTTTCTAAATGGAATGAGAATGATGACATAATTTTTTCTCTAAGAGGCAGAAAATATACATATCGTGAGTTCGAGACTTTGGCAAACAAGGCTTTTCTGAATCGATTTTACAGTTATGGAGGGCTTCCTTCTTCGTATGTGGAAAAGGTGTTCTGGCATGAGATGGAGAATGGGGAGAAGGGAACAGTAGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTCTCATGTGACCCTGATGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGGGAATAACCAATCCCATGCTCTACATTGGAATGCTATTCAGCATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATTAACTATCATCACTCAGGTGCAAATAAAACTTGGTATGGCATTCCTAGTTATGCAACCTCTCAATTTGAGAAGGTCGTTTTAGAGGATGTGTATTTCAATAAGAACTTATCAGAACATGGAGAGGATGGGGCCTTCCAAGTTCTTGCACAAAAAACAACCATGTTCCCTCCAAATGTCTTGCTGCAACATGATGTGCCAGTTTACAAAGCTGTGCAGAAGGCAGGGGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAGGCAGTAAACTTTGCTACCAGTGATTGGTTTCCACTAGGCGCTGCAGCTACCAGGCGTTATACAAATCTTAGAATGCTGCCTATTATTCCATTTGAGGAACTTCTTTGTAAAGAGGCAATGCTAATTTATAAGTCCTCAAAAGGCAGAGTTTTGGAGAAGAAACCTAAAGATTTGGCATCCCGCCATGCTACTATGCTGTCTTTCATGCATCTTATGCATTCTTACAAGCAGGCCCTTTCAGGACTGAACAATTCAAGGGAGTTGTCCAGTTCTTCGAATTCGCCAGTTACTCTGATTTGCAGCCACTGCCATAGAGACTGTTATGTGGCTTACATGCTGTGCAAGCACTGCTGTTCTCATCCCATTTGTCTTTTCCATGACATTGAGTCAAAGACCTGCTCGTGTGGTAGACAATGTACTATTTTTGAGAGAGATGACATGTCGGCACTGAAAGATGCTGCCACAAGTTTCGAGCACAAAAAGGATGTTCTGTTGGAAGTTCAGGATGAAATGAACTGTGGTGTAAACCAGAATAATCCTCGTGATGACGAAAAAAGTGCTGGGGGAACTGTTACTTCTATGGAGAATAGCAAGACAGTGTTGAAGTTCTACAAGAAGAGAAGGCCTTCAACAGTAGGGATGAGAGACGAGAGAGCACATAAATGA 1683 0.4106 MYRRPPRLDAGVKRLNKSNAPKFFKCGRRKRTADKNSLLKSCKVGKFDMANLEWINKIPQCPVFRPSEQEFEDPFVYLQKIVPVACKYGICKIVSPINASIPAAVVLMKEIKDFKFETHVQPLRLSKWNENDDIIFSLRGRKYTYREFETLANKAFLNRFYSYGGLPSSYVEKVFWHEMENGEKGTVEYGVNVEGSAFSCDPDDKLGRSKWNLKGITNPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGIPSYATSQFEKVVLEDVYFNKNLSEHGEDGAFQVLAQKTTMFPPNVLLQHDVPVYKAVQKAGEFVITFPRAYHAGFSHGFNCGEAVNFATSDWFPLGAAATRRYTNLRMLPIIPFEELLCKEAMLIYKSSKGRVLEKKPKDLASRHATMLSFMHLMHSYKQALSGLNNSRELSSSSNSPVTLICSHCHRDCYVAYMLCKHCCSHPICLFHDIESKTCSCGRQCTIFERDDMSALKDAATSFEHKKDVLLEVQDEMNCGVNQNNPRDDEKSAGGTVTSMENSKTVLKFYKKRRPSTVGMRDERAHK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1295 560 Gene3D Cupin 61 405 - -
Glsi04g1295 560 MobiDBLite consensus disorder prediction 514 533 - -
Glsi04g1295 560 ProSiteProfiles JmjN domain profile. 61 102 IPR003349 -
Glsi04g1295 560 ProSiteProfiles JmjC domain profile. 195 360 IPR003347 -
Glsi04g1295 560 Pfam jmjN domain 62 94 IPR003349 -
Glsi04g1295 560 Pfam JmjC domain, hydroxylase 220 343 IPR003347 -
Glsi04g1295 560 PANTHER LYSINE-SPECIFIC DEMETHYLASE 53 499 - -
Glsi04g1295 560 SUPERFAMILY Clavaminate synthase-like 136 378 - -
Glsi04g1295 560 SMART JmjN_1 60 101 IPR003349 -
Glsi04g1295 560 SMART cupin_9 188 360 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1295 Glsi-ChrGlsi04 13870255 13876634 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1295 44 503 JUMONJI Transcription Factor Family AT2G34880 29.422 1.40e-54 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi04g1295 JmjC 1.1e-39 CL0029