Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1281 ATGGGAGGTGGATTTAGAGTGCTTCACCTAGTAAGACCGTTTCTCTCATTTCTGCCTGAAGTTCAGACTGCTGACAGGAAAATCCCATTTAGGGAGAAGGTCATATATACTGTGATCTCTCTGTTCATTTTCCTGGTTTGTAGTCAGCTTCCCCTGTATGGAATACACTCAACAACAGGTGCAGATCCATTCTATTGGATGCGTGTTATCCTTGCATCAAACCGTGGAACTGTTATGGAGCTTGGAATCACCCCCATTGTGACTTCTGGGCTGGTGATGCAACTTCTGGCTGGGTCAAAGATCATTGAAGTGGACAACAATGTACGTGAGGATCGTGCCCTCTTAAATGGAGCACAGAAGCTACTTGGCATCTTGATCGCTGTTGGAGAGGCAGTTGCCTATGTTCTTTCTGGGATGTATGGTAGTGTGAGCCAACTTGGAGTAGGAAATGCCATTCTCATCATCATTCAGCTCTGCTTTGCAGGTATCATTGTGATATGCCTAGATGAGCTTCTTCAAAAAGGATATGGCCTGGGGTCTGGAATTTCCCTTTTCATAGCTACAAATATTTGTGAAAACATTATATGGAAGGCATTTAGTCCCACTACCATTAACAGTGGACGTGGAGCTGAATTTGAGGGTGCTGTTATTGCTTTATTCCATTTGTTGATTACTAGAACAGACAAGGTTCGTGCTCTTCGAGAGGCATTTTACCGGCAGAATCTTCCTAATGTGACAAATCTGCTTGCTACTGTCTTGATCTTCTTAATTGTCATATACTTCCAAGGATTCCGTGTGGTTTTGCCTGTAAGATCAAAGAATGCCCGTGGACAGCAGGGTTCTTATCCAATCAAATTGTTTTATACATCCAACATGCCCATTATTCTTCAGTCAGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGCTGCTTCACCGAAAGTACAGCGGAAACTTCTTTGTAAATCTGTTGGGCAAATGGAAAGAAACTGAATATGGGGGTGGTCAGTCTATTCCTGTTGGTGGTATTGCATACTACATCACGGCCCCATCCAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCCAAAACTTGGATTGAAGTCTCTGGATCATCTGCTAAAGATGTTGCCAAGCAGCTGAAGGAACAACAAATGGTTATGCCTGGGCACCGTGAGTCAAACTTACAGAAAGAGCTGAACCGATACATTCCTACTGCCGCGGCTTTTGGTGGGATATGCATCGGTGCCCTGACAGTTTTGGCAGATTTCATGGGGGCAATTGGTTCTGGCACTGGGATATTACTTGCAGTAACAATCATCTATCAGTACTTTGAGACATTTGAGAAGGAGAGAGCTAGTGAGCTTGGCTTCTTTGGTTTCTAA 1431 0.4403 MGGGFRVLHLVRPFLSFLPEVQTADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVSQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVNLLGKWKETEYGGGQSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1281 476 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 18 470 IPR002208 GO:0015031|GO:0016020
Glsi04g1281 476 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
Glsi04g1281 476 Pfam SecY 77 459 IPR002208 GO:0015031|GO:0016020
Glsi04g1281 476 PIRSF SecY_Sec61alpha 8 471 IPR002208 GO:0015031|GO:0016020
Glsi04g1281 476 Gene3D SecY subunit domain 9 474 IPR023201 -
Glsi04g1281 476 Pfam Plug domain of Sec61p 42 76 IPR019561 -
Glsi04g1281 476 FunFam Transport Sec61 subunit alpha isoform 2 9 474 - -
Glsi04g1281 476 NCBIfam preprotein translocase subunit SecY 31 467 IPR002208 GO:0015031|GO:0016020
Glsi04g1281 476 SUPERFAMILY Preprotein translocase SecY subunit 10 466 IPR023201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1281 Glsi-ChrGlsi04 13331143 13334466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1281 1 476 Miscellaneous Gene Families AT1G29310 93.067 0.0 907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1281 04 13331143 13334466 Glsi04g1281 04 13331143 13334466 ECH