Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1278 ATGATGTCTGACGCCCAACAACTCTACCAGAACCAGTGTCGTCCACTTGTCTCTGTGCACCCTTTGGCTCTGGATGTTATCGTCGAAATTCCAGAAACTGATGAGACTCTGGTCGAAATCGAAAGGGTCACGTGGGCATCCATGCAAGAAGTCAGAATGGTTCCTGCATCAGAGGAAGCCATCCAGTCGCTCAACCCAGTGAAGCTTCAACAAAACGTTGCTGATACCAACCAGTGCTGCGTTTGTCTGGAACAGTTCGAGGACGACGCGAAGGTTTCCGCAATGCCCTGCCATCATGTTTATCACAATGATTGTATTGTTCAGTGGCTAAAAACCAACCTGAACGAATATGGTAGCTTACTTTTTGTCGGCATGTCGAATTTCAGGGTGGTTGCTGTATTTGGAAAGCAACTACCAGAGAAGAGGAATGACCTACCATCACTGTTGTTTTATCAAGGGAAAGGTAAGTGA 471 0.4671 MMSDAQQLYQNQCRPLVSVHPLALDVIVEIPETDETLVEIERVTWASMQEVRMVPASEEAIQSLNPVKLQQNVADTNQCCVCLEQFEDDAKVSAMPCHHVYHNDCIVQWLKTNLNEYGSLLFVGMSNFRVVAVFGKQLPEKRNDLPSLLFYQGKGK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1278 156 Pfam Ring finger domain 77 113 IPR001841 -
Glsi04g1278 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 116 IPR013083 -
Glsi04g1278 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 41 112 - -
Glsi04g1278 156 ProSiteProfiles Zinc finger RING-type profile. 79 109 IPR001841 -
Glsi04g1278 156 SUPERFAMILY RING/U-box 60 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1278 Glsi-ChrGlsi04 13296294 13297536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1278 39 113 C3H Transcription Factor Family AT1G18760 32.051 7.12e-12 59.3