Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1276 ATGGAAGGACTCTACAACTATCGCGTCTCTGACAAACCTTTTGACCATGAAACCTTCCAACACCATCAAGCCTCCCAAGACCACAACCCCACAAGCAAACACACTTTCATTGTCTATTTTTCCGTTCGCTTTACCCTCCGTTCTTCAACTCGCTCTCAATACCGTATTCAGATGCCCTCCCCTCACTCTTCCCAATTTATACCCTGCAAACACTTCTTCCATAACGGCCCTGCTTTACTCCGAAGCAACCTATCCCACCCATGGATTCCCCCTCAAGCGCTTGACGTTTTGATACCAAAGATGATGTCTGACGCCCAACGACTCTACCAGAACCAGCGTCGTCCTCATGTCTCTGTGTACTCTTTGGCTCTGGATGTTATCGTCGAAATTCCAGAAACTGATGAGACTGTGGCCGAAATCGAAAGGGTCACGTGGGCATCCATGCAAGAAGTCAGAATGGTTCCTGCATCTGAGGAAGCCATCCAGTCGCTCAACTCAGTGAAGCTTCAAGAAAACGTTGCCGATACCAACCAGTGCTGCGTTTGTCTCGAACAGTTGAACGACGGCGCCGAGGTTTCGGCAATGCCCTGCCACCATGTTTATCACAACGATTGTATTGTTCAGTGGCTAAAAACTAGCCATTTTTGTCCCTTGTGTCGATACTCAATGTCTGTACCCAACAACTCTTAG 690 0.4826 MEGLYNYRVSDKPFDHETFQHHQASQDHNPTSKHTFIVYFSVRFTLRSSTRSQYRIQMPSPHSSQFIPCKHFFHNGPALLRSNLSHPWIPPQALDVLIPKMMSDAQRLYQNQRRPHVSVYSLALDVIVEIPETDETVAEIERVTWASMQEVRMVPASEEAIQSLNSVKLQENVADTNQCCVCLEQLNDGAEVSAMPCHHVYHNDCIVQWLKTSHFCPLCRYSMSVPNNS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1276 229 SMART ring_2 179 219 IPR001841 -
Glsi04g1276 229 Pfam Ring finger domain 177 220 IPR001841 -
Glsi04g1276 229 CDD RING-H2_PA-TM-RING 178 220 - -
Glsi04g1276 229 SUPERFAMILY RING/U-box 161 225 - -
Glsi04g1276 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 52 223 - -
Glsi04g1276 229 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Glsi04g1276 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 226 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1276 Glsi-ChrGlsi04 13268082 13268771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1276 139 223 C3H Transcription Factor Family AT1G18760 34.091 1.18e-17 77.0