Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1269 ATGTCTCTGAGAAAGGTTTTTCGTTCTCGGAAATTCTCCAGATCCTTCAAGGAAGTTAGAGCCGTCGAGGACGATGAAGAGCGCAAGGACCGACTCGCCGGTGACCCGGAAGACGACGAATACGGAAATGCATGGTCTACCATGCTGCCGGAGCTTCTCGGGGAGATCATTCGCCGAGTTGAGACTTCCGATGAGCAGTGGCCCCACCGCCAAAACGTCGTCGCTTGCGCCTGCGTGTGCAAGAGATGGAGGGACATAACCCAGGAGATCGTGCGCTCCCCTCCTCGCAACGGAAAAATCACTTTTCCTTCTTGCCTTAAGCAGCCAGGACCACGTGACTCTCCCCACCAATGTCTTATAAAGCGGGACAAGAAGACTTCGACATTTTACCTATATCTTGCCCTCACACCACCATCATTCACAGACAAAGGAAAATTTCTCCTAGCAGCTAGGAAATATAGGCGTGGTACCCACAGCGAGTATATAATATCGCTTGATGCTGATGACTTATCCCAAGGAAGCAATGCCTATGTTGGGAAGTTAAGCTCAGATTTTCTTGGCACCAACTTCACAATCTATGATAGCCAGCCACCCCATTGTGGTGCAAAGCCATCAAATGGCAGGGCCAGCCGCCGTTTTTCCTGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTGTCGTACAAGTTCAACATTTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCACTGAAGTTTCCTTACCCATCGTCAGGAGAAAGTTCAGATATCAAATCCCTGGATGGCCATAAGATGAACAATACAGAACACACTGCCTCTGGATACTCAATCTTGAAAAACAAAGCTCCAAGGTGGCATGAGCATTTGCAATGCTGGTGCTTAAATTTCCATGGTCGTGTAACTGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACAGTGGACCAAAGCCAACCCGCAGGGAAAGGAGATGAAGAAACAGTTCTCCTTCAATTTGGAAAAGTAGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCCTTTCAGGCCTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1128 0.484 MSLRKVFRSRKFSRSFKEVRAVEDDEERKDRLAGDPEDDEYGNAWSTMLPELLGEIIRRVETSDEQWPHRQNVVACACVCKRWRDITQEIVRSPPRNGKITFPSCLKQPGPRDSPHQCLIKRDKKTSTFYLYLALTPPSFTDKGKFLLAARKYRRGTHSEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGAKPSNGRASRRFSCKQISPQVPAGNFEVGQVSYKFNILKSRGPRRMVCSLKFPYPSSGESSDIKSLDGHKMNNTEHTASGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPAGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1269 375 PRINTS Tubby superfamily signature 332 351 IPR000007 -
Glsi04g1269 375 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Glsi04g1269 375 PRINTS Tubby superfamily signature 285 302 IPR000007 -
Glsi04g1269 375 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Glsi04g1269 375 PRINTS Tubby superfamily signature 303 319 IPR000007 -
Glsi04g1269 375 PRINTS Tubby superfamily signature 353 375 IPR000007 -
Glsi04g1269 375 PRINTS Tubby superfamily signature 177 201 IPR000007 -
Glsi04g1269 375 Pfam F-box domain 50 91 IPR001810 GO:0005515
Glsi04g1269 375 ProSitePatterns Tub family signature 1. 303 316 IPR018066 -
Glsi04g1269 375 SUPERFAMILY Tubby C-terminal domain-like 96 375 IPR025659 -
Glsi04g1269 375 ProSitePatterns Tub family signature 2. 360 375 IPR018066 -
Glsi04g1269 375 CDD F-box_AtTLP-like 45 89 - -
Glsi04g1269 375 Gene3D Tubby Protein; Chain A 101 375 IPR025659 -
Glsi04g1269 375 Pfam Tub family 106 370 IPR000007 -
Glsi04g1269 375 PANTHER TUBBY-RELATED 26 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1269 Glsi-ChrGlsi04 13125985 13129462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1269 1 375 TUB Transcription Factor Family AT1G53320 71.391 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi04g1269 Tub 9.3e-102 CL0395