Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1267 ATGAATCTACCTACATGTTCTCGTTCACGCAGAGGTTTTGGAAAAACCCAGATTATTGTCTGGGCTTTAGGGTTTTACCATGAAGAGGGAGGGGCATTTTCGTCCTTTGAGAATTTTAAACCGGCCCATATCTATGGACCGGCCCAGACGCACAGAATAAATGTAGAAAAGAGGTTCTTCCTCATCCTAAATCATTCAGCACGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATGGCTGGGATTGGACCACTTACACAGGATTGGGAGCCAGTGGTGATCCGGAAAAAGGCACCAACCGCGGCGGCTAAGAAGGACGAGAAAGTTGTCAACGCCGCTCGTCGCGCCGGCGCCGAGATTGAATCCGTAAAAAAATCAAATGCTGGGTCAAATAAAGCTGCCTCTAGCAGCACTTCTTTGAACACAAGGAAGCTCGATGAAGAAACTGAGAATCTTCATCATGATCGGGTACCAACTGAATTGAAGAAAGCCATCATGCAAGCCCGGATGGAAAAAAAGCTTACACAGGCTCAACTGGCTCAGATGATAAATGAAAAGCCTCAAGTTATACAGGAGTATGAATCAGGTAAAGCTATTCCAAATCAACAAATATTAGGAAAACTGGAGAGAGCTCTTGGTGCAAAACTACGAGGAAAGAAATGA 675 0.4519 MNLPTCSRSRRGFGKTQIIVWALGFYHEEGGAFSSFENFKPAHIYGPAQTHRINVEKRFFLILNHSARREREREREREREKKMAGIGPLTQDWEPVVIRKKAPTAAAKKDEKVVNAARRAGAEIESVKKSNAGSNKAASSSTSLNTRKLDEETENLHHDRVPTELKKAIMQARMEKKLTQAQLAQMINEKPQVIQEYESGKAIPNQQILGKLERALGAKLRGKK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1267 224 CDD HTH_XRE 167 217 IPR001387 -
Glsi04g1267 224 SUPERFAMILY lambda repressor-like DNA-binding domains 162 220 IPR010982 GO:0003677
Glsi04g1267 224 FunFam Multiprotein bridging factor 1 153 224 - -
Glsi04g1267 224 Pfam Multiprotein bridging factor 1 91 161 IPR013729 -
Glsi04g1267 224 SMART mbf_short4 168 223 IPR001387 -
Glsi04g1267 224 Gene3D - 153 224 IPR010982 GO:0003677
Glsi04g1267 224 Pfam Helix-turn-helix 169 219 IPR001387 -
Glsi04g1267 224 Coils Coil 169 189 - -
Glsi04g1267 224 ProSiteProfiles Cro/C1-type HTH domain profile. 169 223 IPR001387 -
Glsi04g1267 224 MobiDBLite consensus disorder prediction 125 156 - -
Glsi04g1267 224 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 85 224 - -
Glsi04g1267 224 MobiDBLite consensus disorder prediction 128 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1267 Glsi-ChrGlsi04 13119441 13123393 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Glsi04g1267 MBF1 1.2e-22 No_clan