Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi04g1242 | ATGTCCATGTCCATGTCCATGGATCTCACTAAGAAGCGAAAGCTCGACGAAAACGGCGTCGTCCCTGCCGATTCCGATTTACAGCTTACCCCTGCTGAAGCACGCAAAATTATTGAGCGTTTTAGCCCCGAGCAGCTCCTCGATATTCTTCAGGAAGCCGTCGTCCGCCACGGCGATGTCCTCGACGCCGCGCGGTCTATTGCGGACCCTGATGTAACCCAGCGTAAGCTGTTTATTCGTGGACTTGGGTGGGATACTACAACTGACGGCCTCCGCTCTCTCTTCTCCACCTACGGTGAGCTCGAAGAAGCCGTTGTTATTCTCGATAAGGCCACCGGTAAGTCTAGGGGTTATGGGTTTGTCACCTTCAAGCACGTCGATGGCGCTTTGCTTGCTCTGAAGGAGCCCAGCAAGAGGATAGATGGTCGTGTCACTGTTACACAACTTGCGGTGGCTGGGAATACGGGATCAAATACGAATGCCCCGGACATTGCATTGCGGAAGATATACGTTGCGAATGTACCGTCTGATCTGCCTGCCGATAAACTGTTGGCTCATTTTTCATTTTATGGGGAGATTGAGGAGGGACCGCTAGGGTTTGATAAGCAGACTGGTAAATCGAAGGGATTTGCGCTTTTTGTGTACAAGACTCCGGAGGGAGCGCAAGCAGCACTTGTGGATCCGGTGAAGATGGTCGAAGGAAGGCAGCTGAATTGCAAGTTGGCAATAACTGATGGGAAGCAAGGGAAACGGGGTGGTGCCGGGCCAATGGGACCTGACGGGGTTCAGGGACCTGGGAATGCCCATGGGGATGGTATGGGATTGGCTCCACCGTCTTCTATGCCAGGGTCGCTTGCTGGTCAGTACGGTGGGCCCGGAGGCCTAGGATCGTATGGGGGGTTTGCAGGTGCGATTCAGGGTCAGCCTCCGATGGGCAATCATCCTCTGAATTCGTCGGTGGGTGGCACAGGGTTGTCTTCGGTGGCGGGCCTGGCTCGACTGGTTTTGGTGCTATGGGGGGTGGTGGTTCTGCGGGTTTGGGAGGAGGTAGTGGTGGACTTGGTGGTTCTGGTGGCGGATTGA | 1083 | 0.5503 | MSMSMSMDLTKKRKLDENGVVPADSDLQLTPAEARKIIERFSPEQLLDILQEAVVRHGDVLDAARSIADPDVTQRKLFIRGLGWDTTTDGLRSLFSTYGELEEAVVILDKATGKSRGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAVAGNTGSNTNAPDIALRKIYVANVPSDLPADKLLAHFSFYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALVDPVKMVEGRQLNCKLAITDGKQGKRGGAGPMGPDGVQGPGNAHGDGMGLAPPSSMPGSLAGQYGGPGGLGSYGGFAGAIQGQPPMGNHPLNSSVGGTGLSSVAGLARLVLVLWGVVVLRVWEEVVVDLVVLVAD | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi04g1242 | 360 | Gene3D | - | 158 | 275 | IPR012677 | - | |
| Glsi04g1242 | 360 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 169 | 226 | IPR000504 | GO:0003723 | |
| Glsi04g1242 | 360 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 77 | 144 | IPR000504 | GO:0003723 | |
| Glsi04g1242 | 360 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 75 | 152 | IPR000504 | GO:0003723 | |
| Glsi04g1242 | 360 | Gene3D | - | 57 | 157 | IPR012677 | - | |
| Glsi04g1242 | 360 | MobiDBLite | consensus disorder prediction | 245 | 271 | - | - | |
| Glsi04g1242 | 360 | PANTHER | GEO13361P1-RELATED | 58 | 299 | - | - | |
| Glsi04g1242 | 360 | SUPERFAMILY | RNA-binding domain, RBD | 67 | 151 | IPR035979 | GO:0003676 | |
| Glsi04g1242 | 360 | SUPERFAMILY | RNA-binding domain, RBD | 161 | 270 | IPR035979 | GO:0003676 | |
| Glsi04g1242 | 360 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 167 | 244 | IPR000504 | GO:0003723 | |
| Glsi04g1242 | 360 | FunFam | UBP1-associated protein 2C isoform A | 58 | 161 | - | - | |
| Glsi04g1242 | 360 | SMART | rrm1_1 | 168 | 240 | IPR000504 | GO:0003723 | |
| Glsi04g1242 | 360 | SMART | rrm1_1 | 76 | 148 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi04g1242 | Glsi-ChrGlsi04 | 12718498 | 12719656 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi04g1242 | 163 | 260 | C2H2 Transcription Factor Family | AT2G19380 | 40.000 | 4.32e-11 | 62.4 |