Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1238 ATGATTAACAGTGGAGCGTGTAGTCTCCGTACGTGTTGCCTACGTCTTCCTCACTTCTCGGAAAGATCTCTAGTCCCAGCAGCTCGCCTCTCATTTACTTGCCGCCGCCGGCTTCTAGTCACCGCTTCCGCAGTCTCAGAAGCGACCAAGAACGAGACCAAAGAGAAGGTCATAGTGATTTCTGGTCCCACTGGGTCGGGTAAAAGCCGGCTTGCATTGCAACTCGCGAAGCGGCTTAATGGTGAAATTGTCAGTGCGGACTCTGTCCAGGTGTACCAGGGTCTTGATGTTGGATCTGCCAAGCCTTCCCTACATGAGAGAAAGGAGGTGACACATCATCTGGTTGACATATTGCACCCATCTGAAGACTATTCAGTTGGACAATTTTTTGAGGATGCAAGGCAAGCTACAAGATCCATTCTTGACAATGGCCGTGTTCCCATTGTTGTTGGGGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTCCCCAAAGCCTCTTCGGAGATTACATCTGAAGTATATTCAGAGTTAGCTGAACTGCAGAGAAATGAAGACTGGGATGCTGCTGTGCAGTTGGTGGTAAACGCAGGTGACGTGAAGGCCCAATTTTTAGCAGTGAATGATTGGTATAGATTACGGCGTAGCTTAGAGATTATCAAGTCTAGTGGATCACCTCCATCTGCTTTCCGGGTACCATATGATTCTTTCAGGGAACAGGGTGATTCTGGTGTTGCTGATGGTTATGAATCTTCTGATGTCAACATGTCTGGTGATGCAATGGAAGAAACCAAGTTCTCAAATTTGGACTATGAGTTTATATGTTTTTTCCTATCTAGGCAAAGGCTTGACCTCTATAGATCAATTGACTATCGGTGTGAAAATATGCTCTTAGGAAGGGATGGGATTCTGTTTGAGGCTCGATGGCTTCTAAAGATGGGTCTTCATCCCAACTCCACTTCTGCAACACGAGCAATTGGTTACAGACAAGCCATGGAATACTTACTCAGATGCAGAGAGCATGGGGGACAGAGTTCAGTTGGAGAATTCTACAAATTTTTATCGGAATTTCAAAAAGAATCTAGGAATTTTGCGAAAAGACAATTGACATGGTTCCGCAATGAACATATATACGATTGGCTTGATGCTTCTATACCTCTGGAAACAGTTCTCAACTTCATCGACAATGCATATCATGATTGGAGTGGAAGTCTCATTGTGCCCGAACACCTTAGAATGTCTAGAGATATATTGAATCGTCCTGAAGTTACTCGACTTAAGTCTTACTGCCCCAAAAATAGGCATTTCATGAAAGGGGAAGATTGTTCTCATATTCTGGACTGGATAAGGAAGACTGAAGGTGACTCTATTGATCCCTCACTTCCGCTTCGCTCGTACTTTCTTTCGTGGTTTCTCGGAAAGTTCAGAGAGAAAATGGTGAACCCCTCGATGCTCCGATCCTTACGCTCAGCCGTAGCTCGTGGCTCTCACCTCGCACGCCGTGGCTATTCCACCGAGGCAGTACCTGAGCGGAAGGTTGCCATCCTCGGAGCTGCCGGCGGGATTGGCCAGCCCCTATCTTTGCTGATGAAGCTCAACCCCCTCGTTTCAAGTCTCTCACTTTACGATATCGCCGGAACCCCCGGTGTCGCTGCCGATGTCAGCCACATCAACACCAGATCTGAGGTGGTTGGATTCCAAGGTGAAGATGAGCTTGGGAAAGCTTTGGAGGGATCAGATGTTGTTGTTATTCCCGCTGGTGTGCCCAGAAAGCCTGGAATGACCCGTGATGATCTTTTCAACATTAATGCGGGCATTGTCAAATCACTCTGCACTGCTATTGCCAAGTACTGTCCCAACGCTCTTGTTAACATGATAAGCAATCCTGTGAACTCTACTGTTCCCATTGCTGCTGAGGTTTTCAAGAAGGCGGGGACATATGATGAAAAGAAGTTGTTTGGTGTTACTACCCTTGATGTTGTCAGGGCAAAAACTTTCTATGCTGGAAAGACCAAAATTCCAGTTGCTGAGGTTAATGTACCTGTTGTAGGTGGCCACGCAGGCATAACTATTCTTCCACTATTTTCTCAGGCAACACCAAAAGCCAATCTGGGTGATGATGACATTAAGGCTCTGACAAAACGGACACAAGATGGAGGAACAGAGGTTGTGGAAGCAAAGGCTGGAAAGGGTTCTGCAACATTGTCAATGGCCTATGCTGGAGCACTTTTTGCCGATGCTTGCCTCAAGGGACTTAATGGGGTTCCTGATGTAGTTGAGTGCTCATTTGTGCAATCCAATGTCACTGAACTTCCTTTCTTTGCTTCCAAGGTGAGGCTTGGAAAAAATGGCGTGGAGGAAGTTCTGGGCTTGGGTCCTCTTTCAGATTATGAAAAGCAAGGTCTTGACAGCCTTAAGCCTGAACTTAAAGCATCTATTGAGAAGGGAATCAGCTTTGCCAACAAGAGTTAG 2484 0.4622 MINSGACSLRTCCLRLPHFSERSLVPAARLSFTCRRRLLVTASAVSEATKNETKEKVIVISGPTGSGKSRLALQLAKRLNGEIVSADSVQVYQGLDVGSAKPSLHERKEVTHHLVDILHPSEDYSVGQFFEDARQATRSILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASSEITSEVYSELAELQRNEDWDAAVQLVVNAGDVKAQFLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGDSGVADGYESSDVNMSGDAMEETKFSNLDYEFICFFLSRQRLDLYRSIDYRCENMLLGRDGILFEARWLLKMGLHPNSTSATRAIGYRQAMEYLLRCREHGGQSSVGEFYKFLSEFQKESRNFAKRQLTWFRNEHIYDWLDASIPLETVLNFIDNAYHDWSGSLIVPEHLRMSRDILNRPEVTRLKSYCPKNRHFMKGEDCSHILDWIRKTEGDSIDPSLPLRSYFLSWFLGKFREKMVNPSMLRSLRSAVARGSHLARRGYSTEAVPERKVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGFQGEDELGKALEGSDVVVIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKTKIPVAEVNVPVVGGHAGITILPLFSQATPKANLGDDDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSNVTELPFFASKVRLGKNGVEEVLGLGPLSDYEKQGLDSLKPELKASIEKGISFANKS 827
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1238 827 FunFam Malate dehydrogenase 660 826 - -
Glsi04g1238 827 FunFam Malate dehydrogenase 513 659 - -
Glsi04g1238 827 Pfam IPP transferase 90 379 - -
Glsi04g1238 827 NCBIfam malate dehydrogenase 516 825 IPR010097 GO:0006099|GO:0030060
Glsi04g1238 827 Gene3D - 660 826 IPR015955 GO:0003824|GO:0016616
Glsi04g1238 827 ProSitePatterns Malate dehydrogenase active site signature. 659 671 IPR001252 GO:0006108|GO:0016615
Glsi04g1238 827 CDD MDH_glyoxysomal_mitochondrial 516 824 IPR010097 GO:0006099|GO:0030060
Glsi04g1238 827 Gene3D - 54 445 IPR027417 -
Glsi04g1238 827 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 57 234 IPR018022 GO:0008033
Glsi04g1238 827 Gene3D - 166 236 - -
Glsi04g1238 827 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 516 658 IPR036291 -
Glsi04g1238 827 FunFam tRNA dimethylallyltransferase 9 165 236 - -
Glsi04g1238 827 Hamap tRNA dimethylallyltransferase [miaA]. 57 396 IPR018022 GO:0008033
Glsi04g1238 827 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 660 823 IPR022383 GO:0016616
Glsi04g1238 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 195 IPR027417 -
Glsi04g1238 827 Pfam lactate/malate dehydrogenase, NAD binding domain 516 658 IPR001236 GO:0016491
Glsi04g1238 827 SUPERFAMILY LDH C-terminal domain-like 659 825 IPR015955 GO:0003824|GO:0016616
Glsi04g1238 827 Gene3D - 514 659 - -
Glsi04g1238 827 PANTHER MALATE AND LACTATE DEHYDROGENASE 502 826 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi04g1238 Glsi-ChrGlsi04 12671017 12684545 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1238 60 339 C2H2 Transcription Factor Family AT2G27760 27.018 2.05e-16 80.9