Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi04g1238 | ATGATTAACAGTGGAGCGTGTAGTCTCCGTACGTGTTGCCTACGTCTTCCTCACTTCTCGGAAAGATCTCTAGTCCCAGCAGCTCGCCTCTCATTTACTTGCCGCCGCCGGCTTCTAGTCACCGCTTCCGCAGTCTCAGAAGCGACCAAGAACGAGACCAAAGAGAAGGTCATAGTGATTTCTGGTCCCACTGGGTCGGGTAAAAGCCGGCTTGCATTGCAACTCGCGAAGCGGCTTAATGGTGAAATTGTCAGTGCGGACTCTGTCCAGGTGTACCAGGGTCTTGATGTTGGATCTGCCAAGCCTTCCCTACATGAGAGAAAGGAGGTGACACATCATCTGGTTGACATATTGCACCCATCTGAAGACTATTCAGTTGGACAATTTTTTGAGGATGCAAGGCAAGCTACAAGATCCATTCTTGACAATGGCCGTGTTCCCATTGTTGTTGGGGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTCCCCAAAGCCTCTTCGGAGATTACATCTGAAGTATATTCAGAGTTAGCTGAACTGCAGAGAAATGAAGACTGGGATGCTGCTGTGCAGTTGGTGGTAAACGCAGGTGACGTGAAGGCCCAATTTTTAGCAGTGAATGATTGGTATAGATTACGGCGTAGCTTAGAGATTATCAAGTCTAGTGGATCACCTCCATCTGCTTTCCGGGTACCATATGATTCTTTCAGGGAACAGGGTGATTCTGGTGTTGCTGATGGTTATGAATCTTCTGATGTCAACATGTCTGGTGATGCAATGGAAGAAACCAAGTTCTCAAATTTGGACTATGAGTTTATATGTTTTTTCCTATCTAGGCAAAGGCTTGACCTCTATAGATCAATTGACTATCGGTGTGAAAATATGCTCTTAGGAAGGGATGGGATTCTGTTTGAGGCTCGATGGCTTCTAAAGATGGGTCTTCATCCCAACTCCACTTCTGCAACACGAGCAATTGGTTACAGACAAGCCATGGAATACTTACTCAGATGCAGAGAGCATGGGGGACAGAGTTCAGTTGGAGAATTCTACAAATTTTTATCGGAATTTCAAAAAGAATCTAGGAATTTTGCGAAAAGACAATTGACATGGTTCCGCAATGAACATATATACGATTGGCTTGATGCTTCTATACCTCTGGAAACAGTTCTCAACTTCATCGACAATGCATATCATGATTGGAGTGGAAGTCTCATTGTGCCCGAACACCTTAGAATGTCTAGAGATATATTGAATCGTCCTGAAGTTACTCGACTTAAGTCTTACTGCCCCAAAAATAGGCATTTCATGAAAGGGGAAGATTGTTCTCATATTCTGGACTGGATAAGGAAGACTGAAGGTGACTCTATTGATCCCTCACTTCCGCTTCGCTCGTACTTTCTTTCGTGGTTTCTCGGAAAGTTCAGAGAGAAAATGGTGAACCCCTCGATGCTCCGATCCTTACGCTCAGCCGTAGCTCGTGGCTCTCACCTCGCACGCCGTGGCTATTCCACCGAGGCAGTACCTGAGCGGAAGGTTGCCATCCTCGGAGCTGCCGGCGGGATTGGCCAGCCCCTATCTTTGCTGATGAAGCTCAACCCCCTCGTTTCAAGTCTCTCACTTTACGATATCGCCGGAACCCCCGGTGTCGCTGCCGATGTCAGCCACATCAACACCAGATCTGAGGTGGTTGGATTCCAAGGTGAAGATGAGCTTGGGAAAGCTTTGGAGGGATCAGATGTTGTTGTTATTCCCGCTGGTGTGCCCAGAAAGCCTGGAATGACCCGTGATGATCTTTTCAACATTAATGCGGGCATTGTCAAATCACTCTGCACTGCTATTGCCAAGTACTGTCCCAACGCTCTTGTTAACATGATAAGCAATCCTGTGAACTCTACTGTTCCCATTGCTGCTGAGGTTTTCAAGAAGGCGGGGACATATGATGAAAAGAAGTTGTTTGGTGTTACTACCCTTGATGTTGTCAGGGCAAAAACTTTCTATGCTGGAAAGACCAAAATTCCAGTTGCTGAGGTTAATGTACCTGTTGTAGGTGGCCACGCAGGCATAACTATTCTTCCACTATTTTCTCAGGCAACACCAAAAGCCAATCTGGGTGATGATGACATTAAGGCTCTGACAAAACGGACACAAGATGGAGGAACAGAGGTTGTGGAAGCAAAGGCTGGAAAGGGTTCTGCAACATTGTCAATGGCCTATGCTGGAGCACTTTTTGCCGATGCTTGCCTCAAGGGACTTAATGGGGTTCCTGATGTAGTTGAGTGCTCATTTGTGCAATCCAATGTCACTGAACTTCCTTTCTTTGCTTCCAAGGTGAGGCTTGGAAAAAATGGCGTGGAGGAAGTTCTGGGCTTGGGTCCTCTTTCAGATTATGAAAAGCAAGGTCTTGACAGCCTTAAGCCTGAACTTAAAGCATCTATTGAGAAGGGAATCAGCTTTGCCAACAAGAGTTAG | 2484 | 0.4622 | MINSGACSLRTCCLRLPHFSERSLVPAARLSFTCRRRLLVTASAVSEATKNETKEKVIVISGPTGSGKSRLALQLAKRLNGEIVSADSVQVYQGLDVGSAKPSLHERKEVTHHLVDILHPSEDYSVGQFFEDARQATRSILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASSEITSEVYSELAELQRNEDWDAAVQLVVNAGDVKAQFLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGDSGVADGYESSDVNMSGDAMEETKFSNLDYEFICFFLSRQRLDLYRSIDYRCENMLLGRDGILFEARWLLKMGLHPNSTSATRAIGYRQAMEYLLRCREHGGQSSVGEFYKFLSEFQKESRNFAKRQLTWFRNEHIYDWLDASIPLETVLNFIDNAYHDWSGSLIVPEHLRMSRDILNRPEVTRLKSYCPKNRHFMKGEDCSHILDWIRKTEGDSIDPSLPLRSYFLSWFLGKFREKMVNPSMLRSLRSAVARGSHLARRGYSTEAVPERKVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGFQGEDELGKALEGSDVVVIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKTKIPVAEVNVPVVGGHAGITILPLFSQATPKANLGDDDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSNVTELPFFASKVRLGKNGVEEVLGLGPLSDYEKQGLDSLKPELKASIEKGISFANKS | 827 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi04g1238 | 827 | FunFam | Malate dehydrogenase | 660 | 826 | - | - | |
Glsi04g1238 | 827 | FunFam | Malate dehydrogenase | 513 | 659 | - | - | |
Glsi04g1238 | 827 | Pfam | IPP transferase | 90 | 379 | - | - | |
Glsi04g1238 | 827 | NCBIfam | malate dehydrogenase | 516 | 825 | IPR010097 | GO:0006099|GO:0030060 | |
Glsi04g1238 | 827 | Gene3D | - | 660 | 826 | IPR015955 | GO:0003824|GO:0016616 | |
Glsi04g1238 | 827 | ProSitePatterns | Malate dehydrogenase active site signature. | 659 | 671 | IPR001252 | GO:0006108|GO:0016615 | |
Glsi04g1238 | 827 | CDD | MDH_glyoxysomal_mitochondrial | 516 | 824 | IPR010097 | GO:0006099|GO:0030060 | |
Glsi04g1238 | 827 | Gene3D | - | 54 | 445 | IPR027417 | - | |
Glsi04g1238 | 827 | NCBIfam | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | 57 | 234 | IPR018022 | GO:0008033 | |
Glsi04g1238 | 827 | Gene3D | - | 166 | 236 | - | - | |
Glsi04g1238 | 827 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 516 | 658 | IPR036291 | - | |
Glsi04g1238 | 827 | FunFam | tRNA dimethylallyltransferase 9 | 165 | 236 | - | - | |
Glsi04g1238 | 827 | Hamap | tRNA dimethylallyltransferase [miaA]. | 57 | 396 | IPR018022 | GO:0008033 | |
Glsi04g1238 | 827 | Pfam | lactate/malate dehydrogenase, alpha/beta C-terminal domain | 660 | 823 | IPR022383 | GO:0016616 | |
Glsi04g1238 | 827 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 57 | 195 | IPR027417 | - | |
Glsi04g1238 | 827 | Pfam | lactate/malate dehydrogenase, NAD binding domain | 516 | 658 | IPR001236 | GO:0016491 | |
Glsi04g1238 | 827 | SUPERFAMILY | LDH C-terminal domain-like | 659 | 825 | IPR015955 | GO:0003824|GO:0016616 | |
Glsi04g1238 | 827 | Gene3D | - | 514 | 659 | - | - | |
Glsi04g1238 | 827 | PANTHER | MALATE AND LACTATE DEHYDROGENASE | 502 | 826 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi04g1238 | Glsi-ChrGlsi04 | 12671017 | 12684545 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi04g1238 | 60 | 339 | C2H2 Transcription Factor Family | AT2G27760 | 27.018 | 2.05e-16 | 80.9 |