Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1224 ATGCTTGTAATTGTAGTGGGAAAGGAAGATGAGAATTCTGATGTAAAGGGGATAATAGGGGCAATCATTGATGACAGTTCTCGCACTGGTAAAGAGGGGAACGTGGCCATCAAGATGGCTTTGGAGGATTTCTCCCATTACACAAATCAAAGCTTTGTTCTTCACATAATGAGCTCTCAAGGGGACCCCCTTCAGGCTGCTTTCGCCGTTAGAGATCTTATCGATAAACAGAACGTGCAAGCCATCGTAGGGCCACAAACATGGGACGAGACATCTCTAGTGGCAGCAATTTGCAGCCAAAAGAGCATTCCAGTTCTTTCTCTTGCTGAGGCAACTCCAACGTGGGCAACAAACAAGTGGCCCTACCTGGTACAAACCTCAGCTAACCAATTTATCCAAATGGAAGCTGTGGCAGCTATCATTCAGTCTTGGGAATGGCATCAGGTTAGCCTCATATATGGAGACACAGATTCTTTATCCACCAGAGGTTTAACTCATCTCTCGGGGGCCCTTAAAGAAGTAGGTGCCAAAATCAGCAACTTTGTAGCAATCCAACCTACTATGTCTTCTTCATTAATGTCCAAAGAACTTGAGAAGCTTAAAGAAGGGGAATGCAGGGTCTTTATTGTCCATTTGTCCTTTCCATTGGCCCTCCATCTATTTGAAATAGCAAAGAAAATAAATATGATAGAGAAAGATTATGTGTGGATTACCACTGATCCTTTTACAAGCCTTTTCCATTCCTTGAATGCATCCATTATTTCGTCGTTGCAGGGGATTGTTGGAGTCAAGAGCTACTTCCCACAAATAGGGTACCAATTTGAGAACTTTGACTCTAGATTTCGCCAAAAATTTAGCTTGGCTAACCCTCATGAGTTTAGCCATGAACCTGGGATTTTTGCAGCCCAAGCCTATGATGCTGCATGGACTCTGGCACTAGCAATGAGGGAAACCAACAATAAAGGAGGCCAAGCTTTGTTAGTTAAGGTTTTACTTGACAATTTTACTGGCTTAAGTGGGAACATTCGGTTCAAGGATCATAAATTAGCTCCTGCACATATTTTTCAGATCATGAATGTGATGAAAGAAGGCTACAGGGAAATTGGGTTCTGGTCAAATGGACTAGATTTCTCAAGAGATATTGGCCAAAATGCTACTTACAATTCTTCAATGAAAGAATTAGGACAAGTGTTTTGGCCTGGAGGAACTTTGTACACTCCAAGAGGATGGACCCTACCGTCAATTGCTAAGCCACTAAGAATTGGGGTTCCCAACTCCTCAGTGAAGCAGTTTGTAAATATAGTTTATGGTCAATCTCAAAATACGACCATTTTCGAGGGATTTGCTATAGAACTTTTCAAAAGAACTGTAGCATTGTTGCCTTTCCATCTGCCATATGAATTCATTGCCTTCCCTAATGATACATTAGATGATTTGGTAGAACAAATTTATTTGAAGAACTACGATGCAGTTGTTGGTGATGTATCTATAGTGGAAAACCGGCACGAGTTTGCTGAATTCACTGAGCCATACACTCTTCCAGGACTTATGATGGTTGTCCCCCTTCAATCAAAAGGAGGCAGTAAAGCTTGGTTATTCCTGAAGCCTTTTACAAAGACCATGTGGATTCTAATAGGGGCCACGTCGCCACGATTGCCTACAATGGCTTTGCACTATGGATGA 1683 0.4207 MLVIVVGKEDENSDVKGIIGAIIDDSSRTGKEGNVAIKMALEDFSHYTNQSFVLHIMSSQGDPLQAAFAVRDLIDKQNVQAIVGPQTWDETSLVAAICSQKSIPVLSLAEATPTWATNKWPYLVQTSANQFIQMEAVAAIIQSWEWHQVSLIYGDTDSLSTRGLTHLSGALKEVGAKISNFVAIQPTMSSSLMSKELEKLKEGECRVFIVHLSFPLALHLFEIAKKINMIEKDYVWITTDPFTSLFHSLNASIISSLQGIVGVKSYFPQIGYQFENFDSRFRQKFSLANPHEFSHEPGIFAAQAYDAAWTLALAMRETNNKGGQALLVKVLLDNFTGLSGNIRFKDHKLAPAHIFQIMNVMKEGYREIGFWSNGLDFSRDIGQNATYNSSMKELGQVFWPGGTLYTPRGWTLPSIAKPLRIGVPNSSVKQFVNIVYGQSQNTTIFEGFAIELFKRTVALLPFHLPYEFIAFPNDTLDDLVEQIYLKNYDAVVGDVSIVENRHEFAEFTEPYTLPGLMMVVPLQSKGGSKAWLFLKPFTKTMWILIGATSPRLPTMALHYG 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1224 560 Gene3D - 129 373 - -
Glsi04g1224 560 Pfam Receptor family ligand binding region 35 360 IPR001828 -
Glsi04g1224 560 CDD PBP1_GABAb_receptor_plant 19 381 IPR044440 -
Glsi04g1224 560 ProSitePatterns DNA polymerase family B signature. 153 161 IPR017964 GO:0000166|GO:0003676
Glsi04g1224 560 Gene3D - 415 536 - -
Glsi04g1224 560 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 548 IPR015683 -
Glsi04g1224 560 Gene3D - 26 352 - -
Glsi04g1224 560 FunFam Glutamate receptor 133 295 - -
Glsi04g1224 560 SUPERFAMILY Periplasmic binding protein-like II 396 548 - -
Glsi04g1224 560 SUPERFAMILY Periplasmic binding protein-like I 20 410 IPR028082 -
Glsi04g1224 560 FunFam Glutamate receptor 414 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1224 Glsi-ChrGlsi04 12284181 12286858 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1224 9 544 Ion Channels AT5G27100 30.511 6.08e-87 286