Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1221 ATGTCCCAAGAACTTGAGAAGCTTAGAGAAGGGGAATGTAGAGTCTTTGTTGTCCATTTGTCCTTTCATTTGGCCCTCCATCTATTTGAGATGGCAAAGAAAATGAATATGTTGGAGAAAGATTATGTGTGGATCACTACTGATCCTCTTACAAGCCTTGTATATTCTTTGAATGCATCCACTATCTCCTCATTGCATGGGATCATTGGAGTCAAGAGCCACTTCCCACAAATAGGACAACATTTTGAGAACTTCCACCTTAGATTTCGCCAGAAATTTAGTTCAGAGAATCCTCAAGAGTTTAACCATGAGCTTGGGATCTTTGCAGCCCAGGCTTATGATGCTGCATGGACTCTGGCTCTAGCAATGAGTGAGACCAACAATAAAGGAGGCCAACTTCTGCTAGATAAGATAATCATGAATGTGATGGAAGAGGGCCGCAAGGAAATTGGGTTCTGGTCCAATGGACTGGATTTCTCAAAAAATATTGGCCAAAATGCTACTTACAGTTCTTCAATGAAAGAATTGGGACAAGTGTTTTGGCCAGGAGGACCTCTGTATACACCAAGAGGATGGACTCTACCATCGAATTCCAAGCCACTGAGAATTGGTGTCCTCATGTCCCCAGTAAAACAGTTCGTAAATATAATTCAGGATCAACACGTAATGTTCGCTGAGTTCACTCAGCCCTTCACTCTTCCGGGAATGGTGATGGTAGTCCCCCTTCAATCAAAAGAAGGCAGTAAAGCTCTAATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTGACCATAGAACGCCTTGAACCTGTTTTTCAAAATGTTGATCAGCTACGGAACAGCCATGCCATGGTTGGACACCTTAAAGGGTCCTACCTTAGTAAATATCTGCAGGAAGTATTACACTTCCATCCTGAAAATATCAAGCAATTTGACTTGCTGGAAGAGAATGTTGAAGCCCTTAGAAGGAAAGAAATAGCTGCTGTCTTCCTTAGCGATATGGCCAAAGTTTTTCTTGCAAAGCATTGTAAAGAGTTTGCTCAGGCTGGGCCTACGTACAAAATTGGAGGATATGGATTTGTAATGTTTCAAACTTATTCTATCTCTCTATTGCACTATTTCTAG 1131 0.4182 MSQELEKLREGECRVFVVHLSFHLALHLFEMAKKMNMLEKDYVWITTDPLTSLVYSLNASTISSLHGIIGVKSHFPQIGQHFENFHLRFRQKFSSENPQEFNHELGIFAAQAYDAAWTLALAMSETNNKGGQLLLDKIIMNVMEEGRKEIGFWSNGLDFSKNIGQNATYSSSMKELGQVFWPGGPLYTPRGWTLPSNSKPLRIGVLMSPVKQFVNIIQDQHVMFAEFTQPFTLPGMVMVVPLQSKEGSKALIITQTYTANLASMLTIERLEPVFQNVDQLRNSHAMVGHLKGSYLSKYLQEVLHFHPENIKQFDLLEENVEALRRKEIAAVFLSDMAKVFLAKHCKEFAQAGPTYKIGGYGFVMFQTYSISLLHYF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1221 376 Pfam Receptor family ligand binding region 5 140 IPR001828 -
Glsi04g1221 376 SUPERFAMILY Periplasmic binding protein-like II 226 364 - -
Glsi04g1221 376 Pfam Ligand-gated ion channel 250 326 IPR001320 GO:0015276|GO:0016020
Glsi04g1221 376 SUPERFAMILY Periplasmic binding protein-like I 2 192 IPR028082 -
Glsi04g1221 376 Gene3D - 247 313 - -
Glsi04g1221 376 Gene3D - 1 204 - -
Glsi04g1221 376 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 250 364 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1221 Glsi-ChrGlsi04 12272010 12274187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1221 254 362 Ion Channels AT2G29110 34.234 1.61e-11 63.9