Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1220 ATGCATGGATTTGTTTCTCTATTTTGTCTTGTGATTATGCTTGTAATTGTACTGGGAAAGGAAGATGAGAGTTCAGATGTAAAGGGGATAATAGGGGCAATCATTGATAACAGTTCTCGCATTGGAAAAGAGGAGAACGAGGCCATCAAGATGGCTTTGGAGGATTTCTCCCATTACACAAATCAAAGCTTTCTTCTTCACATAAGGAACTCTCAAAGGGACCCTCTTCAGGGTGCTTTTGCTGCTAGAGATCTTATTGACGACAAGAAAGTGCAAGCTATAGTAGGACCACAAACATGGGAAGAGACATCCTTAGTGGCAGAAATTTGCGGCCAAAAGAGCACTCCAGTTCTTTCTCTTGCTGAAGCAACTCCAAATTGGGCAACAAAGAAGTGGCACTATCTGGTACAAACCTCGGCTAACCAATTTAAGCAAATGGAAGCTATAGCAGCAATCATTCAGTCTTGGGAATGGCATCAGGTTAGCATAATATATGGAGACACAGATTCTTCATCCACCAGAGGTTTAGCTCATCTCTCAAGAGCCCTTAAAGAAGTAGGTACAAAAATAAGCAACTTTGTAGCCATCCGACCTACTATTTCCTCTACATTAATGTCCCAAGAACTTGAGAAGCTTAGGGAAGGGGAATGTAGAGTCTTCGTTGTTCATTTGTCCTTTCCTTTGACCCTTCACCTATTTGAAATGGCAAAGAAAATGAATATGATGGAGAAAGAATATGCGTGGATCACTACTGACCCTTTTACAAGTCTTGTCCACTCCTTGAATGCATCCACTACCTTATCATTGCAAGGGGTCCTTGGAGTCAAGAGCTACTTCCCACAAATAGGGAACAAATTTGAGGATTTCTACCTTAGATTTCGCAAAAAATTTAGCTCAGAGAACCCTCAAGAGTTTAATCATGTACCTGGGATCTTTGCAGCCCAGGCCTATGATGCTGCATGGACTCTGGCTCTAGCAATGAGCGATACCAACCATAAAGGAGGCCAAGTTCTGTTAGATAAGATTTTTCTTAATAACTTTACTGGCAGAAGTGGAAATATTCGATTCAGTGATCATAAATTAGCTCGTGCACATACTTTGCAGATCATGAATGTGATGAAAGAAGGCTACAGGGAAATTGGGTTCTGGTCAAGTGGACTAGATTTCTCAAAAAATATTGGCCAAAATGCTTCTTACAGTTCTTCCATGAAAGAATTAGGACAAATGTTTTGGCCAGGAGGCGCTTTATATACTCCAAGAGGATGGACCTTACCTTCAAATGGCAAGCCACTAAGAATTGGGGTCCCCAGGTCCTCAATGAAACAGTTTGTAAATATAATTCATGATCAATCTAAAAACACTACCTCTTTCGAGGGATTCACAATAGATCTTTTCAAAAGTACCGTAGCTTTGTTGCCATACCATCTGCCGTACGAATTCTATGTGATCCCTAATGGCACATATGATGATTTTGTCCAACAAATTTATTTGAAGAACTACGATGCAGTTGTGGGAGATGTCTCAATACTGTCAAAGAGGCAGGAGTTTGCTGAATTCACTCAGCCTTTCATTCTTCCAGGACTTGTGATGCTTGAACCCACTATACAAAGTTTTGATCAGCTGCAAAATAGCTATGCCATGGTTGGACATCTTGGCGGGTCCTTCATTCATAAATATCTGCAGGAAGTAGTACACTTCCATCCTGGAAACATCAGGCAATTTGACTCGCTGGAAGAGATAGCCGAAGCCCTAAGAAGGAAAGAGATAGCTGCTGGCTTCCTTAGCGCTCCTAGAGCAAAGTTTTCCTGTCAAAGTATTTTATTTCTATTTAATGTGTTGTGTCTGGGTTTGCTGGCATTTCCAAGGGGATCTCCATTGCTTCATAGTATTAACAAAGCTCTGCTAGAGGCATCTGAAAGTGGCCACCTACTTGATCTAGAAGACAAAATGGTTGCATCAGAGGAATGTGCAGACGAAGAAGATCAACAAGGTGAAGTTGGGGAAACTACAAGTCTTCACGCCAATAGCTTCTCCTCACTCTTCGCTTTTACTGGGTGCACATCAACAATTGCTCTCTTGGGTTACATCTTTCATAGGAGTGACTCAATCCGCAGAAAGAAAGCAATCTGGAGAGTAATTGTGGATATGGTTAAATACTGGCATTCTCAAAGGAGACGTTTCTCAAGAAGAGTCAGCAATGATGCAGATATATAG 2214 0.4133 MHGFVSLFCLVIMLVIVLGKEDESSDVKGIIGAIIDNSSRIGKEENEAIKMALEDFSHYTNQSFLLHIRNSQRDPLQGAFAARDLIDDKKVQAIVGPQTWEETSLVAEICGQKSTPVLSLAEATPNWATKKWHYLVQTSANQFKQMEAIAAIIQSWEWHQVSIIYGDTDSSSTRGLAHLSRALKEVGTKISNFVAIRPTISSTLMSQELEKLREGECRVFVVHLSFPLTLHLFEMAKKMNMMEKEYAWITTDPFTSLVHSLNASTTLSLQGVLGVKSYFPQIGNKFEDFYLRFRKKFSSENPQEFNHVPGIFAAQAYDAAWTLALAMSDTNHKGGQVLLDKIFLNNFTGRSGNIRFSDHKLARAHTLQIMNVMKEGYREIGFWSSGLDFSKNIGQNASYSSSMKELGQMFWPGGALYTPRGWTLPSNGKPLRIGVPRSSMKQFVNIIHDQSKNTTSFEGFTIDLFKSTVALLPYHLPYEFYVIPNGTYDDFVQQIYLKNYDAVVGDVSILSKRQEFAEFTQPFILPGLVMLEPTIQSFDQLQNSYAMVGHLGGSFIHKYLQEVVHFHPGNIRQFDSLEEIAEALRRKEIAAGFLSAPRAKFSCQSILFLFNVLCLGLLAFPRGSPLLHSINKALLEASESGHLLDLEDKMVASEECADEEDQQGEVGETTSLHANSFSSLFAFTGCTSTIALLGYIFHRSDSIRRKKAIWRVIVDMVKYWHSQRRRFSRRVSNDADI 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1220 737 Pfam Bacterial extracellular solute-binding proteins, family 3 454 649 IPR001638 -
Glsi04g1220 737 CDD PBP1_GABAb_receptor_plant 31 393 IPR044440 -
Glsi04g1220 737 FunFam Glutamate receptor 145 307 - -
Glsi04g1220 737 SUPERFAMILY Periplasmic binding protein-like II 409 649 - -
Glsi04g1220 737 SUPERFAMILY Periplasmic binding protein-like I 31 422 IPR028082 -
Glsi04g1220 737 Gene3D - 38 365 - -
Glsi04g1220 737 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 535 698 IPR015683 -
Glsi04g1220 737 Gene3D - 141 385 - -
Glsi04g1220 737 SMART GluR_14 432 653 IPR001320 GO:0015276|GO:0016020
Glsi04g1220 737 SMART AABind_6 430 654 IPR001638 -
Glsi04g1220 737 FunFam Glutamate receptor 426 540 - -
Glsi04g1220 737 Gene3D - 425 548 - -
Glsi04g1220 737 Pfam Receptor family ligand binding region 45 372 IPR001828 -
Glsi04g1220 737 CDD GluR_Plant 429 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1220 Glsi-ChrGlsi04 12186133 12190012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1220 531 697 Ion Channels AT2G29110 26.857 5.39e-07 51.2