Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1219 ATGCTTAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTTAGAACCCTTCAAACACATTATAAGAGGAAGCATGGGATCAAACCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACTCATGAGAACTCATGGAACAACTTGTATAGCATCTTAAAAGAAAATTCAATTGATTCCACAATTTCTATCAGATCGGGTGCGATTCATCGCTGAAGTGCAGGAAGCCATCATGATGAGGGTGCTGCAATAATAGGAGCTATAATAGATAACAGTTCTCGCATAGGTAAAGAGGAGGCAGTGGCTATGAGGATGGCGTTGGAGGATTTCTATCAATACAGTAATCAAAGCTTTGTTCTGCAGATAAAAGACTCTCATGGAGATCCTCGTCAAGCAGTTCTCGCAGCTAGAGATCTTATTGACAAACAGAATGCGCAAGCCATTATAGGACCACAAACATGGGAAGAGACATCCTTAGTGGCCGATATTTGCAGCCAAAATAGCACCCCAGTTCTGTCTCTTTCTGATTCAACTCCAAATTGGGCAACACAGAAATGGCACTATCTGCTGCAAGCCTCACCCGATCATTTCACACAGATGAAAGCCGTAGCTTCCATTATTCAGTCTTGGGAATGGCACCAAGTTAACATAATATATGAAGATAGAGAATCCTTATCCAATGGGGTTTTACCCCATCTCTCTAGAGCCCTCAGCACAGCAGGTGTAGATATAAGCAATGTTCTAGCCATCCCTCCTTTTGTTACCTCTTCATTGTCCCAAGAACTTGAGAAGCTAAGAGAAGGGCCTTGTAGAGTCTTTGTTGTGCATTTGTCCTTTCCTCTTGCCCTCCAATTGTTTGAAACTGCGAAGAAGATGAATATGATGGAGAAGGGCTATGTGTGGATCACTACTGATCCCTTTACAAGCCTTGTCCATTCCTTGAATGCATCCATCATCTCCTTAATGCAAGGGATCATTGGGGCCAAGAGCTATTTTCCACAAATGGGGTTTCAATACGAGGACTTCTATCTTAGATTTCGCCAGAAATATAGCTCAGATAACCCTCAAGAATTTGAAAATGAGCCGGGGATTTTTGCAGCCCAGGCCTATGATGCTGCATGGGCTCTGGCTCTTGCAATGAGGGAAACCAGCAATAAAGGAGGCCGAGTTTTGTTAGATAAGATTTTGCTCAGTAATTTTACTGGTTTAAGTGGAAAATTTAAGTTTATTGACCATAAATTAGCTCCGGCTAGGACCTTTCAGATCATCAATGTGATGGGGAAGAGGTATCGTGAGCTTGGGTTCTGGTCAGATGGACTAAACTTCTCTAAAACTATGGGCCCAAATGCTACTTACCATCCATCAATGAAGGAGCTGGGACAAGTGCTATGGCCAGGAGGGCCCTGGGTTGCTCCAAGAGGATGGACCCTACCAACAAGTGAGAAGCCACTAAGAATTGGAGTGCCCTTTTCCTTAATCAAACAGTTTGTCAATATAATTCAAGATGAATATGAAAATACTACCTCATTCGAGGGTTTTGCCATAGATATTTTCAGAGCAACTGTAGAACTCTTGCCATTCCATCTGCCACACAAATTCTATTCTTTCAATGATACATATGATAATTTGGTGAAGCAAATTTACTTAAAGAATTTTGATGCAATAGTTGGTGATGTAACCATAGTGTCAAGCCGGTATGAGTATGCTGATTTCACTCAGCCCTACACTGATCCAGGAATTGTGATGATAGTCCCTGCTCAATCAAAAGGAGGCCAAAGAGCTTGGTTATTCATGAAGCCTTTCACAAAGACCATGTGGATTCTAATAGTGGTGATGATTATCTACAATGGATTTGTTCTATGGATGTTGGAAAGGAACCATTGCCCTGATCTCAAGGGCTCTGTGTTAAATCAAACTGGGATCATGTTCTGGGTGGCATTGACCACTCTCATCTCCTTACATGAAGAATATGCTGAAGCCCTTAGAAGCAAAGAAATAGCAGCTGCATTTCTTGATGCTCCTGAGGCCAAACTTTTCCTTGCAAAGTATTGTAAAGAGTTCACTCAAGCAGGCCCTATGTACAAAATTGGAGGATTTGGATATGCATTTCCAAGGAAATCATCATTGCTTCACAGTGTAAATAAAGCCCTACTAAAGGTATTTGAAAATGGCAAGCTACGTGATCTGGAGAACAAAATGCTTGCAATTGCATCAAAGGAATGTGGAGACAACGACGTCACAGGGGGAGAAACTACAAGCCTTAGCCCCAACAGCTTCTCGGCACTCTTCACTTTAACAGGAAGTGCATCGACAATTGCTCTCTTGGTTTACATATTTCGTATGAATGATTCAAACAGTGGACAGAGAACAGTGTCGAGACTAATTATGGTGATTGCTCAACTTTGGGGAGCTCCAAAGAGACAATTCTTAAGAAGAGTCAGTGATGTTCCAGAAAGTCCTATGAGGGGAAGCGTTACACAGAAATTTGTCAAGGATGATAATGGTGGTTGGGCTGTTTGTAGCTCTAATCATAACACAGACTTGCACAGAAGTATTACACTGCCATCCCAAAAGATCAAGCAATTTGACTTGCTGGAAGAGCATGCTGAAGCCCTTAGAAGGAAAGAAATAGCAGCTGTCTTCCTTAGCTATCCTGTAGCCAATGTTTTTCTTGCAAAGGATTGTAAAGAGTTTGTTCAGGCTGGGCCTAGGTACAAAATAGGAGGATATGGATTTGCGTTTTCAAAGGAGTCTCCATTGCTTCCTAGTGTAAAAAAGGCACTGCTAGAGTCGTACCTCCCAAGTCAAACACCAGAGGCATTGCGCAAATACAAAGAACAAGAGCTGATAGCTTTAAGAGGAGATGGAACTGGACAACGTTTGGATGGGGAAAGAATCTATGATTATGTTACCTACAATGATTTGGGCAATCCTGATCTAGATGATAGGCTAGCCTGTCCAGTTCTTGGAGGGTCTAGGGAATATCCCTACCCTCGCAGGGGAAGAACTAGCAGGCCACCAACACATAAAGTGGAGCAACAGGGGAAAGAGTTTAAGAGCTATGAAGATATGCGTGATATACTCTTTAAAAATGGCTTTACATTTCCAGTGCCTACTAAAGTGAATCCTGATGGCAAACTGGTATTAAAGTTTCCAATCCCAAGTGTCATTCAAGGTATCCCGCCCCCTGCTGCCTCCTCTTCGACGTCCTGCGTGAAGCCCCCCTTCTCCATACATTCCAGGAACCTGCGTGAAGCTAGAGATCTTATTGATGGACAGAAAGTGCAAGCTATAGCAGGACCACAAACATGGGAAGAGACATCCTCAGTGGCTGAAATTTGCTGCCAAAAGAGCACTCCAGTTCTTTCTCTTGCTGAAGCAACTCAAAATTGGGCAACAAAGAAGTGGCACTATCTGGTACAAACCTCGGCTAACCAATTTAAGCAAATGGAAGCTATAGCAGCAATCATTCAGTCTTGGGAATGGCATCTGGTTAGCATAATATATGGAGACACAGATTTTTCATCCACCAGAGGTTTAGCTCATCTCTCAAGAGCCCTTAAAGAAGTAGAACTTGAGAAGCTTAGGGAAGGGGAATGTAGAGTCTTTGTTGTTCATTTGTCCTTTCCTTTGACCCTCCACCTATTTGAAATGGCAAAGAAAATGAGTATGATCGAGAAAGAATATGTGTGGATCACTACTGATCCTTTTACAAGTCTTGTCCATTCCTTGAATGCATCCACTATCTGCTCATTGCAAGGGGTCCTTGGAGTCAAGAGCTACTTCCCACAAATAGGGAACAAATTTGAGGATTTCTACCTTAGATTTCGCCAAAAATTTAGCTCAGAGAACTCTCAAGAGTTTAATCATGGACCTGGGATCTTTGGATCCCAGGCCTATGATGCTGCATGGACTCTGGCTTTAGCAATGATTGAGACCAACAATAAAGGAGACCAAGTTCCAGGAGGCGCTTTATATACTCCAAGAGGATGA 4053 0.4268 MLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHENSWNNLYSILKENSIDSTISIRSGAIHRXSAGSHHDEGAAIIGAIIDNSSRIGKEEAVAMRMALEDFYQYSNQSFVLQIKDSHGDPRQAVLAARDLIDKQNAQAIIGPQTWEETSLVADICSQNSTPVLSLSDSTPNWATQKWHYLLQASPDHFTQMKAVASIIQSWEWHQVNIIYEDRESLSNGVLPHLSRALSTAGVDISNVLAIPPFVTSSLSQELEKLREGPCRVFVVHLSFPLALQLFETAKKMNMMEKGYVWITTDPFTSLVHSLNASIISLMQGIIGAKSYFPQMGFQYEDFYLRFRQKYSSDNPQEFENEPGIFAAQAYDAAWALALAMRETSNKGGRVLLDKILLSNFTGLSGKFKFIDHKLAPARTFQIINVMGKRYRELGFWSDGLNFSKTMGPNATYHPSMKELGQVLWPGGPWVAPRGWTLPTSEKPLRIGVPFSLIKQFVNIIQDEYENTTSFEGFAIDIFRATVELLPFHLPHKFYSFNDTYDNLVKQIYLKNFDAIVGDVTIVSSRYEYADFTQPYTDPGIVMIVPAQSKGGQRAWLFMKPFTKTMWILIVVMIIYNGFVLWMLERNHCPDLKGSVLNQTGIMFWVALTTLISLHEEYAEALRSKEIAAAFLDAPEAKLFLAKYCKEFTQAGPMYKIGGFGYAFPRKSSLLHSVNKALLKVFENGKLRDLENKMLAIASKECGDNDVTGGETTSLSPNSFSALFTLTGSASTIALLVYIFRMNDSNSGQRTVSRLIMVIAQLWGAPKRQFLRRVSDVPESPMRGSVTQKFVKDDNGGWAVCSSNHNTDLHRSITLPSQKIKQFDLLEEHAEALRRKEIAAVFLSYPVANVFLAKDCKEFVQAGPRYKIGGYGFAFSKESPLLPSVKKALLESYLPSQTPEALRKYKEQELIALRGDGTGQRLDGERIYDYVTYNDLGNPDLDDRLACPVLGGSREYPYPRRGRTSRPPTHKVEQQGKEFKSYEDMRDILFKNGFTFPVPTKVNPDGKLVLKFPIPSVIQGIPPPAASSSTSCVKPPFSIHSRNLREARDLIDGQKVQAIAGPQTWEETSSVAEICCQKSTPVLSLAEATQNWATKKWHYLVQTSANQFKQMEAIAAIIQSWEWHLVSIIYGDTDFSSTRGLAHLSRALKEVELEKLREGECRVFVVHLSFPLTLHLFEMAKKMSMIEKEYVWITTDPFTSLVHSLNASTICSLQGVLGVKSYFPQIGNKFEDFYLRFRQKFSSENSQEFNHGPGIFGSQAYDAAWTLALAMIETNNKGDQVPGGALYTPRG 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1219 1350 Gene3D - 498 614 - -
Glsi04g1219 1350 Gene3D - 215 458 - -
Glsi04g1219 1350 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 75 IPR013087 -
Glsi04g1219 1350 Gene3D - 1211 1299 - -
Glsi04g1219 1350 Gene3D - 615 688 - -
Glsi04g1219 1350 Gene3D Classic Zinc Finger 29 65 - -
Glsi04g1219 1350 Gene3D - 112 437 - -
Glsi04g1219 1350 SUPERFAMILY Periplasmic binding protein-like II 873 952 - -
Glsi04g1219 1350 SUPERFAMILY Periplasmic binding protein-like I 1103 1336 IPR028082 -
Glsi04g1219 1350 SUPERFAMILY beta-beta-alpha zinc fingers 29 64 IPR036236 -
Glsi04g1219 1350 CDD PBP1_GABAb_receptor_plant 105 466 IPR044440 -
Glsi04g1219 1350 Gene3D - 1100 1169 - -
Glsi04g1219 1350 SMART GluR_14 505 756 IPR001320 GO:0015276|GO:0016020
Glsi04g1219 1350 FunFam Glutamate receptor 219 380 - -
Glsi04g1219 1350 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 675 801 IPR015683 -
Glsi04g1219 1350 SUPERFAMILY Periplasmic binding protein-like I 105 495 IPR028082 -
Glsi04g1219 1350 SUPERFAMILY Periplasmic binding protein-like II 481 752 - -
Glsi04g1219 1350 Gene3D - 1170 1208 - -
Glsi04g1219 1350 SUPERFAMILY Lipoxigenase 953 1078 IPR036226 -
Glsi04g1219 1350 Pfam Bacterial extracellular solute-binding proteins, family 3 524 752 IPR001638 -
Glsi04g1219 1350 FunFam Glutamate receptor 499 613 - -
Glsi04g1219 1350 CDD GluR_Plant 502 754 - -
Glsi04g1219 1350 PRINTS Plant lipoxygenase signature 944 965 IPR001246 GO:0016491
Glsi04g1219 1350 PRINTS Plant lipoxygenase signature 1016 1035 IPR001246 GO:0016491
Glsi04g1219 1350 PRINTS Plant lipoxygenase signature 983 999 IPR001246 GO:0016491
Glsi04g1219 1350 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 951 1028 IPR013819 GO:0016702|GO:0046872
Glsi04g1219 1350 Pfam Receptor family ligand binding region 1100 1336 IPR001828 -
Glsi04g1219 1350 Pfam Receptor family ligand binding region 120 445 IPR001828 -
Glsi04g1219 1350 Pfam Lipoxygenase 961 1037 IPR013819 GO:0016702|GO:0046872
Glsi04g1219 1350 Gene3D - 953 1050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1219 Glsi-ChrGlsi04 12141725 12168320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1219 675 799 Ion Channels AT2G29110 36.000 1.09e-15 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g1219 ANF_receptor 1.6e-49 CL0144