Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1216 ATGATCATGGCTACAATAATAATTGTTCTTGGAAGTGCAGTAAGCCATCATGATGAGGGTGCTGCAATAATAGGAGCTATAATAGATAACAGTTCTCGCATAGGTAAAGAGGAGGCTGTGGCTATGAAGATGGCGTTGGAGGATTTCTATCAGTACAGTAATCAAAGCTTTGTTCTGCTGATAAGGGACTCTCATGGAGATCCTAGTCAAGCAGCTCTTGCAGCTAGAGATCTTGTAGACAAACAGAACGCGCAAGCCATTATAGGACCACAAACATGGGAAGAGACATCCTTAGTGGCCGATATTTGCAGCCAAAATAGCACCCCAGTTCTGTCTCTTTCTGATGCAACTCCAAATTGGGCAACAGAGAAATGGCACTATCTACTGCAAGCCTCACCTGATCATTTCACACAGATGAAAGCCGTAGCTTCCATTATTCAATCCTGGGAATGGCACCAAGTTAACATAATATATGAAGATAGAGAATCCTTATCCAATGGGATTTTACCCCATCTCTATAGAGCCCTCAGCACAGCAGGTGTAGATATAAGTAATTTTCTAGCCATCCCTCCTTTTGTTACCTCTTCACTGTCCCAAAAACTTGAGAAACTAAGAGAAGGGCCTTGTAGAGTCTTTGTTGTGCATTTGTCCTTTCCTCTTGCCCACCAACTCTTTGAAACTGCCAAGAAGATGAATATGATGGAGAAGGGCTATGTGTGGATCACTACTAATCCCTTTACTAGCCTTGTCCATTCCTTGAATGCATCCATAATCTCCACAATGCAAGGGATCATTGGGGCCAAGAGCTACTTTCCGCAAATGGGGTTTCAATACGAGGACTTCTATTTTAGATTTCGCCAGAAATATAGCTCAGAGAACCCTGAAGAGTTTGAAAATGAGCCTGGGATCTTTGCAGCCCAGGCCTATGATGCTGCATGGGCTCTGGCTCTTGCAATGAGGGATACCAACAATAAAGGAGGCAGATTTGTCAATATGATTCAAGATGAATCTGAAAATACTACCTCATTCGAGGGCTTTGCTATAGATCTTTTCAGAGCAACTGTAGAACTCTTGCCATTCCACCTGCCGCACAGATTCTATGTTTTCAATGATACATATGATAATTTGGTGAAGCAAATTTATTTAAAGAATTTTGATGCAATTGTTGGTGATGTAACCATAGTGTCAAGCCGATATGAGTATGCTGATTTCACTCAGCCCTACACTGATCCAGGAATTGTGATGATAGTCCCTGCTCAATCAAAAGGAGGACAAAGAGCTTGGTTATTCATGAAGCCTTTCACAAAGACCATGTGGATTCTAATAGTGGTGATGATTATCTACAATGGGTTTGTTCTATGGATGTTGGAAAGGAACCATTGCCCTGACCTTAAGGGCTCTGTGTTAAATCAAACTGGGACCATGTTCTGGGTGGCACTGACCACTCTCATCTCCTTACATGGAGACAAGTTACATAACAATTTGTCAAGGATGACTTTGGTAGTGTGGCTGTTTGTAGCACTAATCATAACACAGACTTACACAGCTAACCTTGCAAGCATGCTGACTGTTGAAAAGCTTGAACCCACAGTAAATGATGTTGATCAGCTAAGAAATAGCAATGCCATGGTTGGATATAATAGAGGATCCTTCTTGAAAAACTATTTGCATGAAGTTTTATACTTCCAACCCGCAAACATAAGGCAAATTAATTCTGAAGAAGAATATGCTGAAGCCCTTAGAAGCAAAGAAATAGCAGCTGCATTTCTTGATGCTGCTGAGGCCAAACTTTTCCTTGCAAAGTATTGTAAAGAGTTCACTCAAGCTGGCCCTATGTACAAAATTGGAGGATTTGCATACGCATTTCCAAGGAAATCATCATTGCTTCACAGTGTAAATAAAGCCCTACTAAAGGTATTTGAAAATGGCCAGCTACGTAATCTGGAGAACAAAATGCTTGCAATGGCATCAAAGGAATGTGAAGAAAACGACAAGGGGGTAGAAACTACAAGCCTTAGCCCCAACAGTTTCTCGGCGCTCTTCACTTTAACAGGAAGTGCATCAACAATTGCTCTCTTAGTTTACATATTTCGTATGAATGATTCAAACAGTGGACAGAGAAGAGTGTTGAGACTAATTATGGCGATTGCTCAACTTTGGGGAGCTCCAAAGAGACAATTCCTAAGAAGAATTAGTGATGTTCCAGAAAGTCATATGAGCTCTCCAAATACATTAGCTTTGCCAACTCAAGTTTAA 2256 0.4113 MIMATIIIVLGSAVSHHDEGAAIIGAIIDNSSRIGKEEAVAMKMALEDFYQYSNQSFVLLIRDSHGDPSQAALAARDLVDKQNAQAIIGPQTWEETSLVADICSQNSTPVLSLSDATPNWATEKWHYLLQASPDHFTQMKAVASIIQSWEWHQVNIIYEDRESLSNGILPHLYRALSTAGVDISNFLAIPPFVTSSLSQKLEKLREGPCRVFVVHLSFPLAHQLFETAKKMNMMEKGYVWITTNPFTSLVHSLNASIISTMQGIIGAKSYFPQMGFQYEDFYFRFRQKYSSENPEEFENEPGIFAAQAYDAAWALALAMRDTNNKGGRFVNMIQDESENTTSFEGFAIDLFRATVELLPFHLPHRFYVFNDTYDNLVKQIYLKNFDAIVGDVTIVSSRYEYADFTQPYTDPGIVMIVPAQSKGGQRAWLFMKPFTKTMWILIVVMIIYNGFVLWMLERNHCPDLKGSVLNQTGTMFWVALTTLISLHGDKLHNNLSRMTLVVWLFVALIITQTYTANLASMLTVEKLEPTVNDVDQLRNSNAMVGYNRGSFLKNYLHEVLYFQPANIRQINSEEEYAEALRSKEIAAAFLDAAEAKLFLAKYCKEFTQAGPMYKIGGFAYAFPRKSSLLHSVNKALLKVFENGQLRNLENKMLAMASKECEENDKGVETTSLSPNSFSALFTLTGSASTIALLVYIFRMNDSNSGQRRVLRLIMAIAQLWGAPKRQFLRRISDVPESHMSSPNTLALPTQV 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1216 751 SUPERFAMILY Periplasmic binding protein-like I 18 341 IPR028082 -
Glsi04g1216 751 Gene3D - 429 560 - -
Glsi04g1216 751 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 699 IPR015683 -
Glsi04g1216 751 Gene3D - 144 282 - -
Glsi04g1216 751 SUPERFAMILY Periplasmic binding protein-like II 339 651 - -
Glsi04g1216 751 Gene3D - 21 325 - -
Glsi04g1216 751 Gene3D - 326 428 - -
Glsi04g1216 751 SMART GluR_14 318 655 IPR001320 GO:0015276|GO:0016020
Glsi04g1216 751 Pfam Receptor family ligand binding region 39 326 IPR001828 -
Glsi04g1216 751 FunFam Glutamate receptor 138 299 - -
Glsi04g1216 751 FunFam Glutamate receptor 321 426 - -
Glsi04g1216 751 Pfam Ligand-gated ion channel 652 685 IPR001320 GO:0015276|GO:0016020
Glsi04g1216 751 FunFam Glutamate receptor 427 565 - -
Glsi04g1216 751 Pfam Bacterial extracellular solute-binding proteins, family 3 340 651 IPR001638 -
Glsi04g1216 751 CDD GluR_Plant 329 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1216 Glsi-ChrGlsi04 12097668 12103850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1216 329 697 Ion Channels AT2G29110 37.097 9.38e-74 256