Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1212 ATGACTATAATGATAACCGTTCTAGGAAGTGCAGGAAGCCATCATGATGAGGGTGCTGCAATAATAGGAGCTATAATAGATAACAGTTCTCGCATCGGTAAAGAGGAGGCTGTGGCTATGAAAATGGCGTTGGAGGATTTCTATCAGTACAGTAATCAAAGCTTTGTTCTACAGATAAGGGACTCTCATGGAGATCCCCGTCAAGCAGCTCTTGCAGATGAAAGCCGTAGTTCCATTATTCAGTCCTGGGAATGGCACCAAGTTAACGTAATATATGAAGATAGAGAATCCTTATCCAATGGGGTTTTACCCCATCTCTCTAGAGCCCTCAGCGAAGCAGGTGTAGCTATAAGCAATGTTCTAGCCATCCCTCCTTTTGTTTCCTCTTCATTGTCCCAAGAACTTGAGAACCTAAAAGAAGGGCCTTGTAGAGTATTTGTTGTGCATTTGTCCTTTCCTCTTGCCCACCAACTGTTTGAAGCTGCGAAGAAGATGAATATGATGGAGAAGGGCTATGTGTGGATCACTACAGATCCCTTTACAAGCGTTGTCCATTCCTTGAATGCATCCATCATCTCCTCAATGCTAGGGATCATTGGGGTCAAGAGCTATTTTCCGCAAATGGAGTTTCAATACGAGGACTTCTATCTTAGATTTCGCCAGAAATATAGCTCAGAGAACCCTGAAGAGTTTGAAAATGAGCCTGGGATCTTTGCAGCCCAGGCCTATGATGCTGCATGGGCTCTGGCTCTTGCAATGAGGGAAACCAACAACAAAGGAGGCCGAGTTTTGTTAGATAAGATTTTGCTCAGTAATTTTACTGGTTTAAGTGGAAAATTTCATTTTACTGACCATAAATTAGCTCCTGCTAGTACTTTTCAGATCATCAATGTGATGGGGAAGAGGTATGGGGAGCTAGGGTTCTGGTCAGATGGACTAAACTTCTCTAAAACTATAGGCCCAAATACTACTTACAATTCATCCATGAAGGAGCTAGGACAAGTGCTTTGGCCAGGAGGGCCCTGGGTTGCTCCAAGAGGATGGACCCTACCAACAAGTGAGAAGCCCCTAAGAATTGGGGTGCCCTTTTCCTCAATCAAACAGTTTGTCAATATAATTCAAGATGAATCTGAAAATGCTATCTCATTCGAGGGTTTTGCTATAGATCTTTTCAGAGCAACTGTAGAACTCTTGCCATTCCATCTGCCACATAAATTCTATGCTTTCAATGATACATATGATAATTTGGTGAAACAAATTTACTTAAAGAATTTTGATGCAATTGTTGGTGATGTAACCATAGTGTCAAGCCGCTATGAGTATGCTGACTTCACCCAGCCCTACACTGATCCAGGAATTGTGATGATAGTCCCTGTTCAATCAAAAGGAGGACAAAGAGCTTGGTTATTCATGAAGCCTTTCACCAAGACCATGTGGATTCTAATAGTTGTGATGATTATCTACAATGGATTTGTTCTATGGATGTTGGAAAGGAACCATTGCCCTGACCTCAAGGGCTCTGTGTTAAATCAAACTGGGATCATGTTCTGGGTGGCATTGACCACTCTCATCTCCTTACATGGGGACAAGTTACATAACAATTTGTCAAGGATGACTATGATAGTGTGGCTGTTTGTGGCACTAATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTGACTGTCGAAAAGTTTGAAGCTAAAGTAAATGATGTTGATCAGCTAAGAAATAGCAATGCCATGGTTGGATATGATAGAGGATCCTTCTTGAAAAACTATCTGCATGACGTTTTACACTTCCAACGCACAAACATAAGGCAAATTAATTCTGCAGAAGAATATGCTGAAGCCCTTAGAAGCAAAGAAATAGCAGCTGCATTTCTTGATGCTCCTGAGGCCAAACTTTTCCTTGCAAAGTACTGTAAAGAGTTCACTCAAGCTGGTCCTATGTACAAAATTGGAGGATTTGGATATGCATTTCCAAGGAAATCACCATTGCTTCACAATGTAAATAAAGCCCTACTAGAGGTATTTGAAAATGGCAAGCTACGTGATCTGGAGAGCAAAATGCTTGCAATTGCATCAAAGGAATGTGAAGATGAAGACACAGGGGGAGAAACTACAAGCCTTAGCCCAAACAGCTTTTGGGCACTCTTCACTTTAACAGGAAGCACATCAACAATTGCTCTCTTGATTTACATTTTTCGTATGAATGATTCAAACAGTGGAGATAGAACAATGTCGAGGCTAATTATGGCAATAACTCAACTTTGGGCTTTTCCAAAGAGACAATTCTTAAGAAGAGTCGGTGATGTTCCAGAAAGTCCTATGAGCTCTCCAAATACATTAGCTTAG 2361 0.4142 MTIMITVLGSAGSHHDEGAAIIGAIIDNSSRIGKEEAVAMKMALEDFYQYSNQSFVLQIRDSHGDPRQAALADESRSSIIQSWEWHQVNVIYEDRESLSNGVLPHLSRALSEAGVAISNVLAIPPFVSSSLSQELENLKEGPCRVFVVHLSFPLAHQLFEAAKKMNMMEKGYVWITTDPFTSVVHSLNASIISSMLGIIGVKSYFPQMEFQYEDFYLRFRQKYSSENPEEFENEPGIFAAQAYDAAWALALAMRETNNKGGRVLLDKILLSNFTGLSGKFHFTDHKLAPASTFQIINVMGKRYGELGFWSDGLNFSKTIGPNTTYNSSMKELGQVLWPGGPWVAPRGWTLPTSEKPLRIGVPFSSIKQFVNIIQDESENAISFEGFAIDLFRATVELLPFHLPHKFYAFNDTYDNLVKQIYLKNFDAIVGDVTIVSSRYEYADFTQPYTDPGIVMIVPVQSKGGQRAWLFMKPFTKTMWILIVVMIIYNGFVLWMLERNHCPDLKGSVLNQTGIMFWVALTTLISLHGDKLHNNLSRMTMIVWLFVALIITQTYTANLASMLTVEKFEAKVNDVDQLRNSNAMVGYDRGSFLKNYLHDVLHFQRTNIRQINSAEEYAEALRSKEIAAAFLDAPEAKLFLAKYCKEFTQAGPMYKIGGFGYAFPRKSPLLHNVNKALLEVFENGKLRDLESKMLAIASKECEDEDTGGETTSLSPNSFWALFTLTGSTSTIALLIYIFRMNDSNSGDRTMSRLIMAITQLWAFPKRQFLRRVGDVPESPMSSPNTLA 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1212 786 FunFam Glutamate receptor 74 233 - -
Glsi04g1212 786 Pfam Receptor family ligand binding region 77 298 IPR001828 -
Glsi04g1212 786 CDD GluR_Plant 355 693 - -
Glsi04g1212 786 FunFam Glutamate receptor 467 605 - -
Glsi04g1212 786 Pfam Ligand-gated ion channel 692 725 IPR001320 GO:0015276|GO:0016020
Glsi04g1212 786 SMART GluR_14 358 695 IPR001320 GO:0015276|GO:0016020
Glsi04g1212 786 Pfam Bacterial extracellular solute-binding proteins, family 3 383 691 IPR001638 -
Glsi04g1212 786 Gene3D - 356 468 - -
Glsi04g1212 786 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 739 IPR015683 -
Glsi04g1212 786 SUPERFAMILY Periplasmic binding protein-like II 334 691 - -
Glsi04g1212 786 SUPERFAMILY Periplasmic binding protein-like I 22 348 IPR028082 -
Glsi04g1212 786 Gene3D - 75 232 - -
Glsi04g1212 786 PIRSF IGluLR_plant 74 766 IPR017103 -
Glsi04g1212 786 PIRSF IGluLR_plant 1 77 IPR017103 -
Glsi04g1212 786 Gene3D - 245 355 - -
Glsi04g1212 786 Gene3D - 469 607 - -
Glsi04g1212 786 FunFam Glutamate receptor 352 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1212 Glsi-ChrGlsi04 11956122 11962109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1212 77 737 Ion Channels AT2G29110 34.632 9.33e-129 405