Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1205 ATGGATCAGATGACTGACTTGGATATGGATCGACGAAGGCATGGATATGTTCATTCTGAACCCTGTATCCTTCTGAGGGGTGCCAACATCTCACATCCAAATATCCGCACAGTGCCGGCTTCTGGGAACACAACTAATCTTGATTCCCACTATTTACCAGATTCTTATGACAATGCTGTAATGTATGGGGTGACACAATACAACAGTATTCAACATCAACACAATCTCGATATGGGTGTTGCAGCTGCAGCCAACTTATATTATTCTGGCATGAATCCTTCTTCTGGTACTGGTGTATTTTCTCTTCCTATTAATCACAGAGCCCCTGATCAGTTGCCAGCCTCTAGCACACTTGCAGTCTCTGGAGTTTCTTCAGATAATTTTGGAAGAAGCAGCAGTTTTGTGGACGATGTCAGAGGTCCCTACAAAAGGAAAAATGCTGAAACTATCAGAGGAAATTGCCAGTATTTTGATGCCTCATCTAGTTCTTCAGTTGCTCCCCCAAATGCAAGGCCCTCTGATGGGGTTGCACCGATGGATACGGCGTCCTTGTCCTTGCCTCAATTCCAAGGAAATAGCATCCCATTACTCATGGAAGTAGGACCTCATGGTAATTTGTGGAACAGATCAGGTGAGTCTGTTATGGTGCACGAACATAACCATTTGATTCGAGCAAACTATTTAGGTCAGCACTTTCAACCAGTTGCTCCTCCCTGGTTAGACCAACAGTTGAATAGTAGTAACAGTGATGGGCGAGCCTGGAATCAGTCTCTTCCAATGCCTTATATGCAAGCACCCAATGTTAATGGCAGTTCATTAGAGATTGCAAATATGGGTTTGCAGAGATATCATGATACAGCTAGCAACATAAGTGGCCTCAGGTTTCTTCATCCTCCTCCTGTCAACCACCAGCACCATAATTATCATCATCCCACGCTGCCTATGCAAGGAGCGAGAGGCCACAATATCAACTTTCAACCTCCAGTGTCTGCAGCTTCATATAGAGTTCCTACAAATCCTTCTCGCAATACTGTGATCCCAGCACCAACTGGTTTTGACATGGGTGGTAGGCATGTTGGCCTTGTACCATCCACAGCCCTACGGATATATCGTCCTCATAGAGGTGTCATGCCTGAGACAACTATTGGAAATCGAAATCTTCCCCCCATGAGCTTTCTTCAAGTTGATGATGTTGCTTTACTTGATGAAGTGGGAAATTTGGTTGATCATCATAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGCAAGTAGACATAGTGAGCTTCTTGCATTGGGTGAGCGGATTGGCAGTGTAAACACTGGTTTATCGGAGGAAACCATTTCAACTCTACTGAAGACCAAAGTTTATGTAACATCTGCTATTGACCTGGAGGAGGCAGCTTCCGAGGACCAGGAAATTGATTCTTGCATAATATGCCAGGATAAATACAAGAACATAGATATGATTGGAATTCTTCAATGTGGGCACGAGTATCATGCAGAGTGCTTAAAGAAATGGTTGCATGTGAAAAATGTCTGCCCCGTATGCAAATCAGAAGCATTGACTCCTGGAAAGAAGGGCGTATAG 1596 0.4405 MDQMTDLDMDRRRHGYVHSEPCILLRGANISHPNIRTVPASGNTTNLDSHYLPDSYDNAVMYGVTQYNSIQHQHNLDMGVAAAANLYYSGMNPSSGTGVFSLPINHRAPDQLPASSTLAVSGVSSDNFGRSSSFVDDVRGPYKRKNAETIRGNCQYFDASSSSSVAPPNARPSDGVAPMDTASLSLPQFQGNSIPLLMEVGPHGNLWNRSGESVMVHEHNHLIRANYLGQHFQPVAPPWLDQQLNSSNSDGRAWNQSLPMPYMQAPNVNGSSLEIANMGLQRYHDTASNISGLRFLHPPPVNHQHHNYHHPTLPMQGARGHNINFQPPVSAASYRVPTNPSRNTVIPAPTGFDMGGRHVGLVPSTALRIYRPHRGVMPETTIGNRNLPPMSFLQVDDVALLDEVGNLVDHHRDMRLDIEDMSYEASRHSELLALGERIGSVNTGLSEETISTLLKTKVYVTSAIDLEEAASEDQEIDSCIICQDKYKNIDMIGILQCGHEYHAECLKKWLHVKNVCPVCKSEALTPGKKGV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1205 531 SUPERFAMILY RING/U-box 478 524 - -
Glsi04g1205 531 SMART ring_2 479 519 IPR001841 -
Glsi04g1205 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 105 524 IPR045191 GO:0061630
Glsi04g1205 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 524 IPR013083 -
Glsi04g1205 531 ProSiteProfiles Zinc finger RING-type profile. 479 520 IPR001841 -
Glsi04g1205 531 CDD RING-H2_RNF24-like 477 523 - -
Glsi04g1205 531 Pfam Ring finger domain 477 520 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1205 Glsi-ChrGlsi04 11589162 11591750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1205 393 524 C3H Transcription Factor Family AT2G15530 45.985 6.10e-34 134