Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1202 ATGGGCAGGCCACCCAGTAATGGAGGCCCCGCCTTTCGCTTTACTCAGCCTGAGGTTGCAGAAATGGAAGCAATTTTGCAAGATCACAATAATGCTATGCCAACACGTGATGTTCTTACAGCTCTTGCGGAGAAGTTCAGTGAATCACCTGATCGAAGAGGCAAGATTACTGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCTATAAGGGCAAAATCAAGTAAGGCTCCTGGAAAGTTAAATATCACACCTATGCCTCGAGATGATTCAAACCCAGTTAGAAATATGCCTCAACCTATGGCTACTCCCATACCTCCTTCAGTTCCACCTACAGGAAAAGGTGCTCCAGAAAATTCAGCAATGGAGTTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTACGATGTTGCAAACTTTCTGTCCCACAGATATTTGGAAACCAGTGATCCGGAGGTGCTGGTCCGATTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGGTTAATGTCCGAAGGAATGTCAGGCCACGCTCTCTGCCATGTGAATCATCAGAATGTGTAGCAGTGCTCCCTGGAGATCTCATACTCTGTTTTCAGGAAGGTAAAGAGCAGGCTCTTTACTTCGATGCTCATGTGCTTGATGCTCAAAGACGGAGGCATGATGTAAGAGGCTGTCGATGTAGATTTTTAGTTCGTTATGATCATGATCAGTCAGAGGAAATAGTGCCACTTAGGAAGGTTTGTCGTAGGCCTGAAACTGATTACAGGTTACAACAACTTCATGCTATGAATGAGGCAACATTTTTGGATCAGCAGAAGACAGGCATGGACGTAGTACCTGTTCATCCTATCAGGGTTACAAGTTCAGTTGACACCGTGCCAAAGCAGCAGAGTACAAGCACTGCCATCTCAACACCAGTTTCGCAAGCAAACGTTTCTCTCGCCCCACAAACTATAAATGTAGATCCAAAAAAAGCTGAAGCAGCCAGTGATATTAAAGGAGGAAACAACATTATTCACCCGGGTGGTACTGTATTCTCAAGCAACGTCATTACAGGCAGTGTTCCGGTAGTTTCTAGTCAGAACATGGCTGAAGGAAAATAA 1116 0.4489 MGRPPSNGGPAFRFTQPEVAEMEAILQDHNNAMPTRDVLTALAEKFSESPDRRGKITVQMKQVWNWFQNKRYAIRAKSSKAPGKLNITPMPRDDSNPVRNMPQPMATPIPPSVPPTGKGAPENSAMEFEAKSGRDGAWYDVANFLSHRYLETSDPEVLVRFAGFGPEEDEWVNVRRNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAMNEATFLDQQKTGMDVVPVHPIRVTSSVDTVPKQQSTSTAISTPVSQANVSLAPQTINVDPKKAEAASDIKGGNNIIHPGGTVFSSNVITGSVPVVSSQNMAEGK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1202 371 SMART HOX_1 7 81 IPR001356 GO:0003677
Glsi04g1202 371 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 325 IPR039276 -
Glsi04g1202 371 Gene3D - 185 257 - -
Glsi04g1202 371 Pfam SAWADEE domain 125 252 IPR032001 GO:0003682
Glsi04g1202 371 Gene3D - 10 84 - -
Glsi04g1202 371 Gene3D - 123 184 - -
Glsi04g1202 371 SUPERFAMILY Homeodomain-like 4 77 IPR009057 -
Glsi04g1202 371 CDD homeodomain 13 75 IPR001356 GO:0003677
Glsi04g1202 371 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1202 Glsi-ChrGlsi04 11563342 11571358 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi04g1202 SAWADEE 3.1e-40 CL0049