Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1187 ATGGTGGCACGAGAGCGACAGGACAGAGAAACCGTGAGTTCCAAGCCAAAAGGGTTGCAAGCAAATCTGAAAAAGCTTAAGCCTGCTCAGAATTTGGAATATGAATCTCCAAAGCAGCTTATTGATTTTCTAAAAGATTTTTTTTGCAGACTAGTAAGTTTAGAAGCATGGTTGAACTGTACTAGTTGGTTTAGCCCTTCTGAAGCCCTTAAAGATCAGAGTTTCCTCTTTCTCTGCCTTGGATTTGCTTCATTGCTCCGCCGAACACCATTCCTCGTGTCTCCTGCAAGGGCGTGGCCATCAATGGACAGCTACTACCACTATGACAACAATGATGCCCATTTGCCTCCTGGCTTTCGCTTCCACCCTACTGACGAGGAGCTCATCACATACTACCTCCTCAAGAAGGTCCTTGACAATAGCTTCACAGGCAGGGCCATTGCTGAAGTTGACCTCAACAAGTGTGAGCCCTGGGAGCTCCCAGAGAAAGCGAAAATGGGGGAGAAGGAGTGGTATTTCTTCAGCCTACGTGATCGCAAGTACCCAACTGGACTACGTACCAATAGGGCAACAGAAGCTGGCTACTGGAAGGCCACTGGGAAAGACAGGGAGATTTATAGCTCCAAGACTGGCTCTCTTGTGGGGATGAAGAAAACTTTGGTTTTCTACAGAGGAAGAGCTCCCAAAGGCGAGAAGAGCAACTGGGTAATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCATTATCTCTCTCGGACCTCCAAGGACGAGTGGGTCATATCCCGTGTCTTCCAGAAGACAGGTTCTGGCCACGGCGGCGCCACCATATCCTCCTGCAGTGGTTCCAAGAAGACAAAAATAACCTGCTCATCTTCTAATTTAAGCATCTACCCAGAACCAAGTTCTCCCTCCTCAGTCTATCTCCCTCCTCTGCTTGACCCATCTTACCCCACCAGCAGCACCGCCGCCATCAACGACCGTGACAGCTGCTCTAACAACTACGAAAGCACTACTACCCCAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCAATACCTTCGACCTCGCTCCCGCGACCCCATCTGTCGCTACGCTGGACCCTTTTGCTCGATTCCCGAGAACCGGCGTCTCTGCCTTCCCGAGCCTCAGGTCACTGCAAGACAATCTTCAGTTGCCGTTATTTTTCTCTCCGCCGCCAGTGGCGCCACCCTTTCACGGGGTTCCGGTTGACATGAATGGTTGTGTCCCTTTCGGGAACTGGACAATGCCAGCGGAGGAGGAGCCGAAGGTTGTGGCAGATGGTGGTTCCGGCATGGTGGCTCTGGGTGCATCCGAGTATGATTGTTTGTGGGGCTTCTGA 1365 0.5106 MVARERQDRETVSSKPKGLQANLKKLKPAQNLEYESPKQLIDFLKDFFCRLVSLEAWLNCTSWFSPSEALKDQSFLFLCLGFASLLRRTPFLVSPARAWPSMDSYYHYDNNDAHLPPGFRFHPTDEELITYYLLKKVLDNSFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTGSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRTSKDEWVISRVFQKTGSGHGGATISSCSGSKKTKITCSSSNLSIYPEPSSPSSVYLPPLLDPSYPTSSTAAINDRDSCSNNYESTTTPREHVSCFSTISNTFDLAPATPSVATLDPFARFPRTGVSAFPSLRSLQDNLQLPLFFSPPPVAPPFHGVPVDMNGCVPFGNWTMPAEEEPKVVADGGSGMVALGASEYDCLWGF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1187 454 Pfam No apical meristem (NAM) protein 116 242 IPR003441 GO:0003677|GO:0006355
Glsi04g1187 454 Gene3D NAC domain 124 270 IPR036093 GO:0003677|GO:0006355
Glsi04g1187 454 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 114 327 - -
Glsi04g1187 454 Coils Coil 454 454 - -
Glsi04g1187 454 FunFam NAC domain-containing protein 100-like 124 271 - -
Glsi04g1187 454 ProSiteProfiles NAC domain profile. 115 267 IPR003441 GO:0003677|GO:0006355
Glsi04g1187 454 SUPERFAMILY NAC domain 109 267 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1187 Glsi-ChrGlsi04 11031617 11035971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1187 105 454 NAC Transcription Factor Family AT5G53950 56.331 7.01e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi04g1187 NAM 3.2e-41 No_clan