Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1184 ATGGCTCCTAGAGACAGACCCACCTCTCTCGCAGGGTCCAACCCCACCCACAACGCCACTGAGATCCGATACAGAGGTGTTAGGAAGAGACCGTGGGGGCGTTATGCTGCTGAGATCCGTGACCCGGGGAAGAAAACCCGCGTTTGGCTTGGCACTTTCGACACGGCGGAAGAGGCGGCGCGTGCTTATGACGCCGCTGCTCGGGAGTTTCGAGGTGCCAAGGCTAAGACCAATTTCCCCACCCCTTCTCAGTTTACGAATAGCTCCAGCCGTAGCCCCAGTCAGAGTAGCACGATTGATACCTCGTCGCCGCCACCTTCGACGCTAGACCTCACGCTTACTCCACGTTCTTCCAGCGGCGCTTTGGGGTTCCCGGTGGCTCGCCCGATCATGTTTTTTGAGGCGTTTGCCGTTAGTCGCCCCCGTGAGATGTGCGGGCTTGATCGGCCGGCGGCGGATTTCCGTCTCCCCGTTGCCGGTGATAGCGCCAATAGTGACTCCGATTCGTCTTCCGTTGTGGATTACGAGCGTGCTCCACCTCGGAGACTCTTGGATCTTGACCTTAACGTTGCTCCTCCTCCGGAGGTAGCCTGA 594 0.5926 MAPRDRPTSLAGSNPTHNATEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPSQFTNSSSRSPSQSSTIDTSSPPPSTLDLTLTPRSSSGALGFPVARPIMFFEAFAVSRPREMCGLDRPAADFRLPVAGDSANSDSDSSSVVDYERAPPRRLLDLDLNVAPPPEVA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1184 197 MobiDBLite consensus disorder prediction 77 108 - -
Glsi04g1184 197 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Glsi04g1184 197 MobiDBLite consensus disorder prediction 157 197 - -
Glsi04g1184 197 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Glsi04g1184 197 FunFam Ethylene-responsive transcription factor 2 23 81 - -
Glsi04g1184 197 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Glsi04g1184 197 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Glsi04g1184 197 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Glsi04g1184 197 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Glsi04g1184 197 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 176 - -
Glsi04g1184 197 MobiDBLite consensus disorder prediction 1 25 - -
Glsi04g1184 197 MobiDBLite consensus disorder prediction 72 108 - -
Glsi04g1184 197 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Glsi04g1184 197 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1184 Glsi-ChrGlsi04 10988082 10988675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1184 11 138 AP2-EREBP Transcription Factor Family AT3G15210 58.219 1.23e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi04g1184 AP2 1.7e-15 CL0081