Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1178 ATGGCTGATGCAGCAGGTTTAGCTGAGGCAGCAGGGTCAAGATTTAGTTCATTGGAGTTAATTGGACAAGGGTCATTTGGTGACGTTTATAAAGCGTTTGATAAGGAGCTCAACAAGGAAGTTGCTATCAAAGTGATTGATTTGGAAGAGTCAGAGGATGAGATTGAGGACATTCAGAAGGAAATTTCTGTTCTGTCACAATGTCGATCTCCATACATTACTGAGTATTATGCCTCCTATCTCCATCAAACTAAGCTTTGGATAGTAATGGAGTACATGGCTGGCGGCTCTGTTGCAGATCTAATCCAATCAGGTCCTCCACTTGATGAAGTGTCAATCGCTTGCATTTTACGTGACTTGTTGCATGCAATTGATTACCTACATACTGAAGGAAAAATTCATAGAGACATCAAAGCGGCAAACATTTTATTGACTGAGAATGGTGATGTGAAGGTTGCAGATTTTGGTGTTTCTGCACAGCTAACTAGAACCATATCAAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCCCCAGAGGTTATTCAGAATTCCGATGGGTATAATGAAAAGGCAGATATCTGGTCTCTGGGGATCACAGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCTGACCTTCACCCTATGAGAGTGCTATTTATCATACCCCGAGAGAGTCCGCCACAGCTAGATGAGCATTTTTCCCGTCCCATCAAAGAATTTGTTTCATTGTGTTTAAAGAAGCTTCCAGCTGAGGCAAGTGTCTCTGCCATACAAACTCTTACTGCTGTTTCATTTTCTTTCTATTGGGCACATATTATAAGGCCAAGTGCTAAGGAACTTCTCAAACACCGTTTTATTCGGAATGTCAGAAAGAGTGCAAAGCTTTTGGAGAGAATAAGAGAGCGTCCCAAGTATCAAATAAAAGAAGATGGGGAGACCCCTAGAAATGGTCCAAGAGGGATAGGAGAGGCATCTGACACAATGAAGGTGGCAAGAGATGTAAGAGGTGAAGAATCTACTCAATCCAATCCCAGTGGTCAGGGCAAAACCCTAAAAAATTCTGGATGGGACTTCAGCATTGGTGGATCACACGGTACCAGTACCCTTCGTAGTGTTGCAAGACCACCTCAGTCAAGAGATAAGAAAACAGATGTTTCACATGATCAGCTTAACAAAAGAAAACCTCCAGAGAGTCACTATCAAGGGGCATCTGCCAATAGAAGTGCTCTATATGAATTGCAAGAAACTTCTGTCAGGAAGGATGTTAGAGTTCCCTACCATCCAGAGCATCAGGATAATCACTTTGAAGATGATGAATTGTCTGGGAATGGATTAGGAACTGTTGTTATTCGATCCCCTAAAGCATCACAGCCATCACTGATTGATGACCAAAGCTCCCGGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTACCAGTGGAACTGTTGTTTTCCGTGATCAACATGATGATAATGACTCTCCTCAGACACTGAGGTCCAGGCTGGTACTTAATGGGAGAACTTCAAATGCCTCACTTGAAGATAGTGCCACAAATCTTGCAGAGGCAAAGGCTGCTATTCAAAAACCAAGGAAAGGAAATGCTGGTGAGAGATTGGCACTGGGAAAGAATAGCAATGGTGGGCAGGAAAGCAGGAGAGACCAAATGACAAACATCTCGGATTCCTCCAGACCATCTCGTGAATACATTGGTCCACAACAGGGAATTTCAAGATTGCACAATGCGAGGGATGACCAAGACAGTGTCAAAATATTGTCATCCTCAGTGCCATTATCCGCTTTACTTGTTCCTTCTTTAAAAGAGGTCACTGCTGATGATCCAGAAGGGTCTATTGTACAAGAAATAACCAATTCACTTATATACATGGAGCACATAAAACCTGGATCCTGTGATGCTCTTGTCAAAAAGTTGCTTCAGCGGTTGGCAAGTTCAAAGGAATCTTCATTGAAGGACCTGCAGGAGCTAGGGGCCCAATTATTCACCAAGTCAGCTCCTGAAGAAACCCAAAATATGAGTGCAGAAGCCGATAACAGAAAGAAACATCAGAACAAGGAACTTCATTCCAATAGCAATTTAGGCCCTCTTGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAACCTCGCGGGATGTAAATCCAGCTTGA 2178 0.4311 MADAAGLAEAAGSRFSSLELIGQGSFGDVYKAFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYASYLHQTKLWIVMEYMAGGSVADLIQSGPPLDEVSIACILRDLLHAIDYLHTEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRESPPQLDEHFSRPIKEFVSLCLKKLPAEASVSAIQTLTAVSFSFYWAHIIRPSAKELLKHRFIRNVRKSAKLLERIRERPKYQIKEDGETPRNGPRGIGEASDTMKVARDVRGEESTQSNPSGQGKTLKNSGWDFSIGGSHGTSTLRSVARPPQSRDKKTDVSHDQLNKRKPPESHYQGASANRSALYELQETSVRKDVRVPYHPEHQDNHFEDDELSGNGLGTVVIRSPKASQPSLIDDQSSRSSSSYASFEDASTSGTVVFRDQHDDNDSPQTLRSRLVLNGRTSNASLEDSATNLAEAKAAIQKPRKGNAGERLALGKNSNGGQESRRDQMTNISDSSRPSREYIGPQQGISRLHNARDDQDSVKILSSSVPLSALLVPSLKEVTADDPEGSIVQEITNSLIYMEHIKPGSCDALVKKLLQRLASSKESSLKDLQELGAQLFTKSAPEETQNMSAEADNRKKHQNKELHSNSNLGPLARFLLSRWQGQTSRDVNPA 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1178 725 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Glsi04g1178 725 CDD STKc_MST3_like 13 309 - -
Glsi04g1178 725 MobiDBLite consensus disorder prediction 378 398 - -
Glsi04g1178 725 MobiDBLite consensus disorder prediction 340 377 - -
Glsi04g1178 725 MobiDBLite consensus disorder prediction 456 478 - -
Glsi04g1178 725 SMART serkin_6 15 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1178 725 MobiDBLite consensus disorder prediction 683 697 - -
Glsi04g1178 725 MobiDBLite consensus disorder prediction 529 584 - -
Glsi04g1178 725 ProSiteProfiles Protein kinase domain profile. 15 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1178 725 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 10 672 - -
Glsi04g1178 725 SUPERFAMILY Protein kinase-like (PK-like) 12 316 IPR011009 -
Glsi04g1178 725 MobiDBLite consensus disorder prediction 548 574 - -
Glsi04g1178 725 MobiDBLite consensus disorder prediction 309 407 - -
Glsi04g1178 725 MobiDBLite consensus disorder prediction 672 704 - -
Glsi04g1178 725 Pfam Protein kinase domain 16 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1178 725 Coils Coil 41 68 - -
Glsi04g1178 725 Gene3D Transferase(Phosphotransferase) domain 1 12 319 - -
Glsi04g1178 725 FunFam serine/threonine-protein kinase dst1 isoform X1 12 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1178 Glsi-ChrGlsi04 10941442 10956483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1178 1 722 MAP Kinase Kinase Kinase Kinase AT3G15220 61.486 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Glsi04g1178 Pkinase 1.2e-61 CL0016