Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1175 ATGGAGGCCAAGAGCATCGAGAAGAAGCGAGCCTCGACCGAGAAGGCGAGGAAGGATAACAACGTAGTGGAAGAAGAAATAGATGACGAAGTAGAATTAGAGGAGGATGAAAGTGGCGGTGGTGGAGTTGCAGAAGAGGAGAAGAAGAAAGGGGGTGTGGGAGGGAGTGGGAGAAGAGCTGGAGTTTCTCCACCTTCTTGTCAGGCAGAGAGGTGTGGGGCTGATTTGAGTGATGCCAAGAGGTACCATCGCCGCCATAAGGTCTGTGAGTTCCATTCCAAGGCTCCTGTTGTCATGGTTGCAGGGCAAAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCACGACTTGGCAGAATTTGATGAAGCTAAGAGAAGCTGCCGGAGACGGTTGGCCGGACACAACGAACGGCGCCGGAAAAGCACTGCTGAAGTTTACAATGAGGGCTGCAGCCGCACCAAAGGCCAACATCACCCAAAGGAAAACCATTGCAGGAATGCTGATGACAGGGGAAGAGTTCAGATGAGCATTTCTGGGAGTTCTGGCTACAAATCTTTCCACATCAGATAA 570 0.514 MEAKSIEKKRASTEKARKDNNVVEEEIDDEVELEEDESGGGGVAEEEKKKGGVGGSGRRAGVSPPSCQAERCGADLSDAKRYHRRHKVCEFHSKAPVVMVAGQRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSTAEVYNEGCSRTKGQHHPKENHCRNADDRGRVQMSISGSSGYKSFHIR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1175 189 MobiDBLite consensus disorder prediction 132 189 - -
Glsi04g1175 189 MobiDBLite consensus disorder prediction 25 41 - -
Glsi04g1175 189 MobiDBLite consensus disorder prediction 137 170 - -
Glsi04g1175 189 Pfam SBP domain 67 140 IPR004333 GO:0003677
Glsi04g1175 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 151 IPR044817 GO:0003677
Glsi04g1175 189 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Glsi04g1175 189 SUPERFAMILY SBT domain 65 146 IPR036893 GO:0003677|GO:0005634
Glsi04g1175 189 Gene3D - 63 128 IPR036893 GO:0003677|GO:0005634
Glsi04g1175 189 MobiDBLite consensus disorder prediction 1 24 - -
Glsi04g1175 189 MobiDBLite consensus disorder prediction 1 70 - -
Glsi04g1175 189 Coils Coil 6 26 - -
Glsi04g1175 189 FunFam Squamosa promoter-binding-like protein 14 58 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1175 Glsi-ChrGlsi04 10905661 10907010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1175 44 144 SBP-box Gene Family AT2G33810 66.337 1.01e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi04g1175 SBP 3.9e-32 No_clan