Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1173 ATGGTGCTGCTCAGATGCTTCCTCCAATGGGGGTTATTGGCCTGCTGTCTTTGCTTATCTCTGGGTCTTGAAACCCCGGCCCCATCTTGTGACCCTCGAGATTTTCTGGCACTGAAGCAGTTTGCAGGCAACCTCACAAATGGGTCTATTATCACAGCATGGTCTGAAAATGTTGGCTGCTGCAGATGGTTGGGAGTTGTCTGTGATGATAATGTGACTGATGGTGCAGCTTTTAGTAGAGTGATCAAGTTGATTTTGCCTCAAATGGGTCTCAAAGGGGTAATTTCAAACTCCCTAGCACAATTAGATCAGCTAATTGAGCTGGATCTTTCATTCAATCATCTTCAAGGTGGGTTGCCTGCAGAATTCTCAAAGTTGAAGCTGTTGAAATTTCTTGATTTGAGCCATAATATGCTGTCAGGACCTGTTGCTGGAGTACTTTCTGGTTTGCAATTCATTCAGATACTGAATATTTCTAGCAATTCATTTGTTGGAAATCTCTTCCAGCTTGGGGAATTCCCACATCTCCTTGTATTCAACATAAGCAACAACTCATTTAGTGGTCAGTTCAATTCTCAAATTTGCAGTTCCTCTATGGGGCTTCATGTTCTGGATCTATCAGCAAATCGTTTTGCCGGTGGTCTTGAAGGCTTGGACTATTGCAGGACATCTCTCCAACAGTTGCATTTGGACTACAATTTATTTTCAGGCCCTCTTCCAGATCCCTTGTTCTCATTGTCAGCCTTGGAGCAACTCTCAGTATCTATGAACAACTTCTCTGGCCAGTTAAGCAAGCAGCTAAGTAAGCTCTCAAGCTTAAAGTCTCTAATTATTTCTGGGAACCATTTTTCTGGCGAACTCCCAAATGTGTTTTGGAATCTGTCCTACCTAGAACAATTAGCAGCACACTCCAATTCATTTTCTGGGAAATTGCCTTCTACCCTCACTTTATGCTCAAAGCTTCGAGTGCTTGATCTTCGAAATAATTCTCTGAAAGGTCCTATTGATCTTGACTTCACTAGGTTGCCTAATCTTTGTACACTTGATCTTGCTACTAATCGATTTACTGGACCCCTTCCAAACTCTTTGTCCTATTGCCGTGAATTGAAAGTTTTGAGCCTTGCTAAGAATGAGTTGAATGGATCCATCCCTGACAGCTATGTGAACCTTACTTCGCTTTTGTTTCTATCTTTATCAAACAACAGCATAGAGAACTTATCTGGGGCACTGTCGGTGCTGCGGCACTGCAAAAACCTCACCACCCTTATCCTCACAAAGAATTTCCACGGTGAGGAAATACCAGAAGGTGTTGTTGGCTTTGAGAGCCTAATGATTTTAGCACTTGGAAATTGTGGTCTTAAAGGCCAAGTCCCTGCTTGGCTAATGAATTGCAGTAAATTGGAAGTTCTTGATTTGTCTTGGAACCATTTGGAAGGTAGTATCCCTCCTTGGATTGGTCGGATGGACAATTTGTTCTACTTGGATTTCTCAAACAATTCTTTCACGGGAGAAATACCAAAAAGTTTGACAGAGTTGAAGGGCCTCATTTCCACAAATAGCAGTAGATCAAATCTTTCTGCATCTGCAGCCATTCCTCTCTATGTTAAGAGAAACAAGAGTGCTAATGGGCTGCAATATAACCAGGTCTCAAGTTTCCCTCCTTCGATATACTTGAGCAATAACAGAATAAGTGGAATAATATGGCCGGAAATTGGGCGATTGAAAGCACTGCATGTCTTTGATTTGAGCAGGAATAACATCTCCGGTTCCATTCCTAGTTCTATTTCAGAGATGGGGAATTTGGAAACACTAGATCTGTCATATAATGATCTCCATGGAATGATCCCGACATCATTTAACGACCTCACATTCTTGTCAAAGTTCAGTGTAGCACATAATCACTTGCAGGGACCAATTCCAACGGGGGGACAGTTTCTAAGTTTTCCTAGTTCAAGCTTTGAGGGCAACCTGGGACTTTGTAGGGATATAGATTCTCCTTGCAAAATCGTCAACAATATGGGCTTGAGGCCCAATACTACTACTGGTTCTGCCAGCAAATTTGGTAGAAACAATGTTCTTGGTATAACAATTAGCATAGGTGTAGGGCTTGCATTGCTTCTTGCTATTGTTCTGCTAAAAATATCAAAGAGGGATGAGGATAAGCCAGTTGATAACTTTGATGAGGAACTAAGCAGGCCACACAGGTTATCCGAAGCACTTGTTTCTTCAAAATTGGTGCTTTTTCAGAATTCGGATTGCAAGGATCTCACAGTTGCAGACTTGTTAAAATCCACAAACAATTTCAACCAAGCAAACATTATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCGAGTCTTCCAAATGGCACAAAAGCTGCTATTAAGAGACTTTCTGGGGACTGTGGTCAGATGGAACGTGAATTCCAAGCCGAAGTAGAGGCCCTTTCAAGAGCTCAGCACAAGAACCTTGTTTCTCTCAAAGGTTATTGCCGGCACGGCAATGACAGGTTGTTAATTTACTCCTACCTGGAGAATGGAAGCTTGGACTATTGGCTGCATGAGAGTATGGATGGAAATTCACCTCTGAAATGGAATGTAAGACTCAAGATTGCCAAAGGCGCAGCTCATGGACTAGCTTACTTGCACAAGGGATGTCAACCGTATATAGTCCATCGAGATGTTAAATCCAGTAACATACTTTTGGATGATAAATTCGAAGCTCACTTAGCTGACTTCGGTCTCTCGAGGCTACTTCAGCCTTATGATACTCATGTCACAACAGATTTAGTAGGTACTCTAGGATACATTCCTCCAGAATATAGTCAGACATTAACAGCAACCTTCCGGGGTGATGTTTATAGCTTTGGTGTTGTTCTTCTTGAGCTTCTTACCGGTAGAAGGCCTGTAGAAGTCATCAAGGGGAAAAACTGCAGAAATCTGGTGTTTTGGGTGTTTCAGATGAAATCTGAAAACAAGGAGCAGGAGATTTTTGATTCGGCCATTTGGCACAAGGATCATGAGAAACAGCTCTTGGAGGTTCTGGCCATTGCTTGTAGATGTCTAGACCAGGATCCAAGGCAGAGACCCTCTATTGAAGAAGTTGTTTCATGGCTTGATCGTGTAGGATTTGATGGTTTTCAACAATGA 3150 0.4229 MVLLRCFLQWGLLACCLCLSLGLETPAPSCDPRDFLALKQFAGNLTNGSIITAWSENVGCCRWLGVVCDDNVTDGAAFSRVIKLILPQMGLKGVISNSLAQLDQLIELDLSFNHLQGGLPAEFSKLKLLKFLDLSHNMLSGPVAGVLSGLQFIQILNISSNSFVGNLFQLGEFPHLLVFNISNNSFSGQFNSQICSSSMGLHVLDLSANRFAGGLEGLDYCRTSLQQLHLDYNLFSGPLPDPLFSLSALEQLSVSMNNFSGQLSKQLSKLSSLKSLIISGNHFSGELPNVFWNLSYLEQLAAHSNSFSGKLPSTLTLCSKLRVLDLRNNSLKGPIDLDFTRLPNLCTLDLATNRFTGPLPNSLSYCRELKVLSLAKNELNGSIPDSYVNLTSLLFLSLSNNSIENLSGALSVLRHCKNLTTLILTKNFHGEEIPEGVVGFESLMILALGNCGLKGQVPAWLMNCSKLEVLDLSWNHLEGSIPPWIGRMDNLFYLDFSNNSFTGEIPKSLTELKGLISTNSSRSNLSASAAIPLYVKRNKSANGLQYNQVSSFPPSIYLSNNRISGIIWPEIGRLKALHVFDLSRNNISGSIPSSISEMGNLETLDLSYNDLHGMIPTSFNDLTFLSKFSVAHNHLQGPIPTGGQFLSFPSSSFEGNLGLCRDIDSPCKIVNNMGLRPNTTTGSASKFGRNNVLGITISIGVGLALLLAIVLLKISKRDEDKPVDNFDEELSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKASLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHESMDGNSPLKWNVRLKIAKGAAHGLAYLHKGCQPYIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVFWVFQMKSENKEQEIFDSAIWHKDHEKQLLEVLAIACRCLDQDPRQRPSIEEVVSWLDRVGFDGFQQ 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1173 1049 SUPERFAMILY L domain-like 55 356 - -
Glsi04g1173 1049 Gene3D Transferase(Phosphotransferase) domain 1 844 1043 - -
Glsi04g1173 1049 ProSiteProfiles Protein kinase domain profile. 768 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1173 1049 Pfam Protein kinase domain 769 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1173 1049 Gene3D Ribonuclease Inhibitor 412 546 IPR032675 -
Glsi04g1173 1049 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Glsi04g1173 1049 Gene3D Phosphorylase Kinase; domain 1 732 843 - -
Glsi04g1173 1049 FunFam Phytosulfokine receptor 1 731 843 - -
Glsi04g1173 1049 SMART serkin_6 768 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1173 1049 Pfam Leucine rich repeat 555 611 IPR001611 GO:0005515
Glsi04g1173 1049 FunFam Leucine-rich repeat receptor-like kinase 34 154 - -
Glsi04g1173 1049 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Glsi04g1173 1049 Pfam Leucine Rich Repeat 466 485 IPR001611 GO:0005515
Glsi04g1173 1049 Pfam Leucine Rich Repeat 105 126 IPR001611 GO:0005515
Glsi04g1173 1049 CDD STKc_IRAK 774 1041 - -
Glsi04g1173 1049 Gene3D Ribonuclease Inhibitor 150 403 IPR032675 -
Glsi04g1173 1049 FunFam Leucine-rich repeat receptor-like protein kinase 844 1048 - -
Glsi04g1173 1049 SMART LRR_typ_2 464 488 IPR003591 -
Glsi04g1173 1049 SMART LRR_typ_2 270 293 IPR003591 -
Glsi04g1173 1049 SMART LRR_typ_2 126 149 IPR003591 -
Glsi04g1173 1049 SMART LRR_typ_2 598 621 IPR003591 -
Glsi04g1173 1049 SMART LRR_typ_2 102 125 IPR003591 -
Glsi04g1173 1049 SMART LRR_typ_2 342 366 IPR003591 -
Glsi04g1173 1049 SMART LRR_typ_2 574 597 IPR003591 -
Glsi04g1173 1049 SMART LRR_typ_2 390 413 IPR003591 -
Glsi04g1173 1049 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 240 335 - -
Glsi04g1173 1049 SUPERFAMILY L domain-like 284 655 - -
Glsi04g1173 1049 Gene3D Ribonuclease Inhibitor 34 149 IPR032675 -
Glsi04g1173 1049 Gene3D Ribonuclease Inhibitor 556 661 IPR032675 -
Glsi04g1173 1049 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 405 1039 - -
Glsi04g1173 1049 ProSiteProfiles Leucine-rich repeat profile. 392 414 IPR001611 GO:0005515
Glsi04g1173 1049 SUPERFAMILY Protein kinase-like (PK-like) 750 1039 IPR011009 -
Glsi04g1173 1049 PRINTS Leucine-rich repeat signature 598 611 - -
Glsi04g1173 1049 PRINTS Leucine-rich repeat signature 129 142 - -
Glsi04g1173 1049 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524
Glsi04g1173 1049 FunFam Tyrosine-sulfated glycopeptide receptor 1 339 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1173 Glsi-ChrGlsi04 10872868 10876017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1173 35 1045 Receptor kinase-like Gene Family AT1G55610 33.453 9.90e-162 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Glsi04g1173 Pkinase 2.7e-44 CL0016