Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1166 ATGAACAGCGGATTGACGGAGCGGCGTGGTTCCCCTTCTCCTCTTGCTCCTGCTAGTAGCTGTCATTTTGACAGTTCCTTAGGTAATTTTGGAAGAATTGTAAATCAACAATTCCTTGAGGTGCAAAAGAGGAGAATATATGACACAACTAATGTCTTGGAAGGCATTGGTCTAATTGAGAAAAAGCTAAAGAATAGAATACATTGGAAGGGATTTGATTCTTCAATGTCTGAGGAGATGGATGGTGATGTCTCTATGCTAAAGGCCCAAGTTGAGAAACTTTCCTTGGAAGAGTTCACTTTAGATTATCAAATAAGGGAAATGCAGGAAAGACTGAGGAGTTTGAGTGAAGATGAAAACAACCAGAAGTTGTTGACTATCCATAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTATCTTGTCAGGATTGGTTCCTGTTGAATGCAATGTGAAGGGACTTGACCATCAGGCTCAACTTCCTTCTCATACATGCTCTGATCTAAATTCTTCACAAGAGTTGGTTGGGGGGATGATGAAGATTGTTCCTTCAGATTTTGATAATGATACAGATTATTGTCTTCTATCGGATGCTGAAGTTAGCATTACAGATATAAACACAGCTAGTGTTAATTGGAATGGGGCGGACATGCTTCATCCTGATTTTGGGATCATCTCAAGGCCACAAACTCCATCACCTAAGTTTGCTGAAGCGCCATCGACAGTGGGTACCTCTTCTCAGAGGTGA 765 0.4105 MNSGLTERRGSPSPLAPASSCHFDSSLGNFGRIVNQQFLEVQKRRIYDTTNVLEGIGLIEKKLKNRIHWKGFDSSMSEEMDGDVSMLKAQVEKLSLEEFTLDYQIREMQERLRSLSEDENNQKLLTIHRGDIESFLEAQWVPLMSILSGLVPVECNVKGLDHQAQLPSHTCSDLNSSQELVGGMMKIVPSDFDNDTDYCLLSDAEVSITDINTASVNWNGADMLHPDFGIISRPQTPSPKFAEAPSTVGTSSQR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1166 254 Coils Coil 105 125 - -
Glsi04g1166 254 SUPERFAMILY E2F-DP heterodimerization region 84 135 IPR037241 -
Glsi04g1166 254 MobiDBLite consensus disorder prediction 234 254 - -
Glsi04g1166 254 PANTHER TRANSCRIPTION FACTOR E2F 39 137 IPR015633 GO:0000978|GO:0006357
Glsi04g1166 254 MobiDBLite consensus disorder prediction 239 254 - -
Glsi04g1166 254 Gene3D - 20 73 IPR036388 -
Glsi04g1166 254 Gene3D - 77 147 - -
Glsi04g1166 254 SMART E2F_TDP_2 22 71 IPR003316 GO:0005667|GO:0006355
Glsi04g1166 254 SUPERFAMILY "Winged helix" DNA-binding domain 35 72 IPR036390 -
Glsi04g1166 254 Pfam E2F/DP family winged-helix DNA-binding domain 39 71 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1166 Glsi-ChrGlsi04 10794649 10798193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1166 154 253 E2F-DP Transcription Factor Family AT2G36010 43.137 5.59e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi04g1166 E2F_TDP 1.6e-12 CL0123