Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1154 ATGGGTAGCATCTGTTGCAAGCCCTCTGCAATTGATGACAGTAGGGAGAGCCCAAGGGAGCGTTTATCCAGCAAGGCTTCATTGGACTCTCGTGTATCCCGGGCTACCTCATCAAGGAGGGAGGAAGCATACCGATTGAAGGATAGATATGATAGTAATGATGGTAGAATTGCATTAGTTGATAAGCAAGGAAATGGCTCTGTTCAATCGCAAGGTGATAACTTTGAAAGGAAGAGGGAGAAAATGGAATTCATTGTTGCACAGCATACAGGGATTGTTAGTGTTCCAAAAGCCACAGAAGGGGAGCAGGTTGCAGCTGGGTGGCCTTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGTTACCACGGCGTGCAGATTCTTTTGAGAAGTTGGATAAGATTGGACAGGGAACTTATAGTAATGTTTATAGGGCTCGTGATCTTGAACAAAAGAAAATTGTTGCTTTAAAAAAAGTGAGGTTTGATAATCTTGAACCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCATATTCTACGCAGGCTTGATCATCCCAATGTCATAAAACTGGAAGGCCTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAACATGACTTGGCTGGCCTTGCGTCACATCCTGGACTGAAGTTCACAGAAACACAGGTCAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTGCTGCACCGTGACATTAAGGGTTCCAACCTTCTAATTGACAACAATGGAATCTTGAAGATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCCAATCAAATTCAGCCACTGACAAGCCGAGTTGTCACTCTTTGGTATCGACCACCTGAGCTTTTGCTTGGAGCCACTTACTACAGCACTGCAGTAGATTTATGGAGTACAGGTTGCATACTTGCTGAGCTGTATGCTGGCAAGCCTATCATGCCGGGAAGAACTGAGGTTGAGCAGTTACATAAAATTTTCAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCGAAGTTACCTCATGCAACAATATTTAAGCCCCAACAGCCCTATAGGCGGTGTGTTGCAGAAACATTTAAAGAGTTTCCTGCACCTGCATTAGCACTCATGGAGACCCTTTTATCTATAGATCCTGCTGATCGTGGAACGGCTGCATCTGCTTTGAAGAGTGAGTTCTTCACAGTGAAACCCCTGCCTTGTGATCCTTCAAGTTTGCCCAAGTACCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGATGAAGAAGCTAGAAGACAAGGAGCCACAGGAAGCAAGGGCCAGAGACATGACCTTGAGAGAAGAGGGACAAGAGAATCGCGAGCTGTCCCTGCACCTGATGCTAATGCTGAACTGGTCCTGTCAATGCAGAAGAGACAAGGTCAGCCGAATTCTAAGAGCCGCAGTGAGAAGTTTAACCTTCATCCTGAAGAAGTTGCTTCAGGATTTCCCATTGATCCCCCTAGGCCATCACAAGCTGTAGAAGTAGGTATAGGTCCCCCAGTACAGAAACATAAAAGAGCCTCCCATTCAGGTCCACTTTGTAACCGCGCCGCATGGGCCAAAGCCGGGAAAAACCAGGATGATGCTCCAAAGATTTCAAATGGGGGTGACTTGTCAACGTTGTCTGGCTTAGTTGCAGCAAGGAGGAGCGTGTTGTCTGATGATTGCCGAGAAAGGTTTGGATCATCACAAGAGGAGGTTCCCAAACTAATAAGCAGATTCCCGGGATCCTTGAAGGAGGCTTCTGATACATCGATACAACAGGATCAAAAGCATCACTTACAGGGCGCAGAAGGTCCTCCTCCAAAGGAAGAAGGGAGAGGAAGCAACAAAGACCCAATTCTTGTCGGTTATGGGTCGAAGGGTCATAAAATTCATTATTCTGGTCCATTGCTTGTTCCATCTAACAACGTGGACCAGATGCTGAAGGACCATGATCGACAAATTCAAGAAGCTGTTCGAAGAGCGCGGCTGGACAAGGCAAAGATGAGAAGACTTCAAGCTGAAGGGAACCAGATAACCACCAATTCATTATTTGTTTCTGGTCGCTGA 2139 0.4605 MGSICCKPSAIDDSRESPRERLSSKASLDSRVSRATSSRREEAYRLKDRYDSNDGRIALVDKQGNGSVQSQGDNFERKREKMEFIVAQHTGIVSVPKATEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTETQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNQIQPLTSRVVTLWYRPPELLLGATYYSTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKEFPAPALALMETLLSIDPADRGTAASALKSEFFTVKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGATGSKGQRHDLERRGTRESRAVPAPDANAELVLSMQKRQGQPNSKSRSEKFNLHPEEVASGFPIDPPRPSQAVEVGIGPPVQKHKRASHSGPLCNRAAWAKAGKNQDDAPKISNGGDLSTLSGLVAARRSVLSDDCRERFGSSQEEVPKLISRFPGSLKEASDTSIQQDQKHHLQGAEGPPPKEEGRGSNKDPILVGYGSKGHKIHYSGPLLVPSNNVDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQITTNSLFVSGR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1154 712 PANTHER CELL DIVISION PROTEIN KINASE 129 421 - -
Glsi04g1154 712 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1154 712 CDD STKc_CDK9_like 131 415 - -
Glsi04g1154 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Glsi04g1154 712 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1154 712 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Glsi04g1154 712 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Glsi04g1154 712 MobiDBLite consensus disorder prediction 606 645 - -
Glsi04g1154 712 SUPERFAMILY Protein kinase-like (PK-like) 125 421 IPR011009 -
Glsi04g1154 712 FunFam probable serine/threonine-protein kinase At1g54610 214 455 - -
Glsi04g1154 712 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1154 712 MobiDBLite consensus disorder prediction 625 639 - -
Glsi04g1154 712 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Glsi04g1154 712 MobiDBLite consensus disorder prediction 607 621 - -
Glsi04g1154 712 MobiDBLite consensus disorder prediction 1 46 - -
Glsi04g1154 712 MobiDBLite consensus disorder prediction 425 477 - -
Glsi04g1154 712 MobiDBLite consensus disorder prediction 434 469 - -
Glsi04g1154 712 Coils Coil 678 698 - -
Glsi04g1154 712 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Glsi04g1154 712 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1154 Glsi-ChrGlsi04 10676070 10681955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1154 123 472 Core Cell Cycle Gene Families AT5G10270 51.913 1.35e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi04g1154 Pkinase 1.2e-68 CL0016