Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1148 ATGAGCCGATCAATCGAGCCGCCGCCGCTGCCCAAATATTCGTTTCGGAATTCCAAGAGGAGAGTATATTCAGGTAGCAGTTCTCGGTTGATGGACCCTGACGTCGTGGAAATTCCTCCCCCAATTCATCACCCTTCAAAATTGATCAAACAGAAGGAGGATTGTGTCTATAAATTTTGTGGTGGTTGCCAACTTGCCATTCAGGATATTACCGGGGCTATTCTGCGTGATGTGATTGACATTGAAAACGATGAAGACTCTGCTGATTTGGTGTTAATTGGTGAAAAAGTTGGTTTAAGCAATAAGGGGAAGACAATTGAAGCTGTTCATAATGGTTTTGACGATCGTCAAGCTATGGAAGTGTCTGACAATAATTTTTGCCCACCTGGTGTGGAAAATCTTGGACCAGCTAGTGGGGTTGAGTCCTCTAATGGTTATGCTTCAGTATCACATAATTTAATCAACATTGATGGGCATGGTTCTGATCTATCATATGATGATGATGACTACATTGATCTTTTTTCGGAAGATTACATGGATGTAGATGAGTATGCTATGTTACAAGCACACTTCGATAATGTGGATATACCTGCTGGAATTGAGGCACCAATTCCTTGGCTGCCTGATTTTGATCTAGGTTTGAAGAAAACTGGAAGTAGTTCGTTGTATCCTTGGTGTCATACGCAGTCAGATGCTAAAAATTCTCATGTGACAGACTTATCTCACCCTTCTTGGGCAACAGAGCCTACTAACCCTGTCCAAGGAACTTCAGTGGGTAGTTCTAGTTTGCAAACCAAATTTGATGCTATTGATCACCCTCCTGGACTAGATTTGTCTTCTCCTCATTTATTTACTCAAGCTGCCCTAGCTAAAAAGGAATCAACTGCTTTACAACATGGATGGGGTAAGTTGAACTTGAATCTATCACTAGGAGTAGATTCATCTAAACCTCAATGGTTTACGGGAGCTTTCCAGAGTAAAAAGAAGTCTGCTGCTTTTGCTGCATCAACTAACCATGGTTCTGTAGACAATTCAGAGTTCATGAAGCTGCCTCCTGGAAGTGAACCACCATATTGGGGAAAATTTAAAGGTGCAAAAAAGGCAAATGGCAAAGATGTTTTGTCCCATTCACATGTCTTTAAACCTGTAGCTGGGTCATTCCCTGCTCCTGGAATAGAATCAGCAAACCCCTGGTGGAAGGATCCTAATAATTATAACCCATCTTTTGTCAATCATACAGCTCCAACTAGTTTTTATTATCCATTTGATCCTCTTCATGCCCCTCCTGAGCAAATGTTTGGTAACACTTGGGTTCACAATTATGATAGAGATGGAAAGAATGAAACCACTACAGACACCCCTGTTGTTACAATCTCTGATGAAGATAGAGATGAACTTTTAAGGAAATTCCAACATTTCAAAAAATTTGACACCGTGGAAGACACTTCAGATCATTACTATATTGGCCAAAATAATTCCTTGAAGCAGCATTCAAAGATTTGGTCGAAAAGAATTCAGGAGGAGTGGAAGATTCTGGAGAAGGATTTGCCCGATTCAATATTTGTCAGAGTTTACGAATCAAGGATGGATCTTTTGAGGGCTGTAATTATTGGAGCGGAGGGAACTCCTTATCATGACGGTCTCTTCTTTTTTGATGTTTTCTTTCCCAGTGGCTACCCCAATGTGCCACCGAAAGTCCACTACCACTCTGGTGGTCTTCGGCTCAACCCAAATTTGTATAATTGTGGCAAAGTATGCCTTAGTCTACTTAATACTTGGTCTGGCAGTGAGAACGAGAAGTGGATTCCAAGTTTTTCAACAGTTCTACAGGTTCTAGTCTCTATACAAGGCCTAATCTTGAATACAAAGCCTTTCTTTAATGAACCTGGATATGCTCGTATGAGTGGTTCAGCAGCTGGTGAAATGAGGTCCCTGCAATATAATGAGGACACTTTTATCCTATCATTGAGGACAATGATGTATTTGATGAAAAGGCCTCCAAAGAATTTTGAGGGCTTTGTGAAGGGCCATTTCTGCAGCCGAGCTCATGATATCTTGGTGGCATGTAAAGCATATATGGATGGTGCTCAAGTTGGCTGTTTGGTCAAAGGTGGGGTGCAAGATGTTGATGAAGGTGACAGGAGCTGCTCAAAGCAGTTTAAGGATAATTTATCTGGATTTTTGACTAAGCTTGTTAGAGAGTTTACTCAAGTTGGAGCTAAGGACTGTGAGAAATTCTTGCCTCCAGCAACTACAGGGAACATGCCGGTGGCTGGTTTGCCTGAGGCTGCTACCTGA 2298 0.4164 MSRSIEPPPLPKYSFRNSKRRVYSGSSSRLMDPDVVEIPPPIHHPSKLIKQKEDCVYKFCGGCQLAIQDITGAILRDVIDIENDEDSADLVLIGEKVGLSNKGKTIEAVHNGFDDRQAMEVSDNNFCPPGVENLGPASGVESSNGYASVSHNLINIDGHGSDLSYDDDDYIDLFSEDYMDVDEYAMLQAHFDNVDIPAGIEAPIPWLPDFDLGLKKTGSSSLYPWCHTQSDAKNSHVTDLSHPSWATEPTNPVQGTSVGSSSLQTKFDAIDHPPGLDLSSPHLFTQAALAKKESTALQHGWGKLNLNLSLGVDSSKPQWFTGAFQSKKKSAAFAASTNHGSVDNSEFMKLPPGSEPPYWGKFKGAKKANGKDVLSHSHVFKPVAGSFPAPGIESANPWWKDPNNYNPSFVNHTAPTSFYYPFDPLHAPPEQMFGNTWVHNYDRDGKNETTTDTPVVTISDEDRDELLRKFQHFKKFDTVEDTSDHYYIGQNNSLKQHSKIWSKRIQEEWKILEKDLPDSIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSGYPNVPPKVHYHSGGLRLNPNLYNCGKVCLSLLNTWSGSENEKWIPSFSTVLQVLVSIQGLILNTKPFFNEPGYARMSGSAAGEMRSLQYNEDTFILSLRTMMYLMKRPPKNFEGFVKGHFCSRAHDILVACKAYMDGAQVGCLVKGGVQDVDEGDRSCSKQFKDNLSGFLTKLVREFTQVGAKDCEKFLPPATTGNMPVAGLPEAAT 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1148 765 MobiDBLite consensus disorder prediction 237 260 - -
Glsi04g1148 765 FunFam Probable ubiquitin-conjugating enzyme E2 23 463 739 - -
Glsi04g1148 765 Gene3D Ubiquitin Conjugating Enzyme 459 739 IPR016135 -
Glsi04g1148 765 Pfam Ubiquitin-conjugating enzyme 504 624 IPR000608 -
Glsi04g1148 765 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 500 660 IPR000608 -
Glsi04g1148 765 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 417 742 - -
Glsi04g1148 765 CDD UBCc 502 629 IPR000608 -
Glsi04g1148 765 SMART ubc_7 503 660 - -
Glsi04g1148 765 SUPERFAMILY UBC-like 490 667 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1148 Glsi-ChrGlsi04 10583634 10590244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1148 468 751 Miscellaneous Gene Families AT2G33770 48.951 1.47e-84 286