Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1141 ATGGGGGTGTCTCACTCAGCACATGATCCTGTGGTCACTCTGTGTGGTCATCTGTACTGCTGGCCTTGCATATTCAAGTGGCTTCAAGTCAAGAGTTCCTCTGATGAATCGGACCAGCAGCCTACTTGCCCAGTTTGTAAGGCTGACATCTCTCATAATTCATTAGTCCCCCTTTATGGCCGTGGAACTTCTAGTTCAGATTCTGAAGCCAAGAAACCCCAGATGGATCTAGGAATACCTCGTAGGCCACCTCCTTACAGTTTGAATGATATGTTAAATTCTACGAGTGCATCTGCTTCCCATCCAGGTCAACTCCACCCAAATTATTTCCCTTCACAACCACCGCCATTTCATTATCCGCAATACTTGCCTCACCAGTATCGAGGTTCTGCTGCAACTGGATCACCATATCTTGGGGGTGCAGCTATGAGTAGTTTCTCTAATCCAATTATTGGTACGTTTGGGGAAATGGTCTTCACAAGGATTTTTGGGAGCTCAGATGCTAATTTGTTTACTTATCCTTATGTCAATCCTTACCCTCATAATGGAAGTGGCAGCCTTAGAATGAGAAGGCAGGAAATGCAGATTGGGAAATCTCTAAGCAGAGTATCTGTCTTCCTTCTCTGTTGTATCATTCTGTGTAGTGCATCCAATTTACATACTAATGTATCCAAGAAAGTGTGTGCGGAAGTGAAGTGTTTGATTGCTATATTGGCAATGAGAACTTTTATAAGGGTAGATGCTGGAAACAACAACCATCTTAATCCACTAGTAAAGGCAAATGTGTGGCCTTATGGTATTGATCTTAATAACACAAGGGGTCGATTCACTAATGGCAAAACTGGAGCCGACTTTGCTGCTATTAATCTGGGTTTACCAATGCCTCCTCCGTACTTGAATCTCTCCGATGGGGAACGAAGTCAAATAACCACTGGAATAAACTATGCATCAGGAGCATGTGAAATTTATACACTTTATGGTCTTGGAGCTAGAAAGTTTGTGGTGTCTGGCATTACATCTTGTGAGCCCCATCACTATATACATTGTGAATCAAGGTACTATGCAGATAAGCTTCCTCAAAGGCTACTAGAGTTGCAGTCTGAACTCTTGGTTCATTATTTATAG 1125 0.4267 MGVSHSAHDPVVTLCGHLYCWPCIFKWLQVKSSSDESDQQPTCPVCKADISHNSLVPLYGRGTSSSDSEAKKPQMDLGIPRRPPPYSLNDMLNSTSASASHPGQLHPNYFPSQPPPFHYPQYLPHQYRGSAATGSPYLGGAAMSSFSNPIIGTFGEMVFTRIFGSSDANLFTYPYVNPYPHNGSGSLRMRRQEMQIGKSLSRVSVFLLCCIILCSASNLHTNVSKKVCAEVKCLIAILAMRTFIRVDAGNNNHLNPLVKANVWPYGIDLNNTRGRFTNGKTGADFAAINLGLPMPPPYLNLSDGERSQITTGINYASGACEIYTLYGLGARKFVVSGITSCEPHHYIHCESRYYADKLPQRLLELQSELLVHYL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1141 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 213 IPR045103 GO:0005783|GO:0006511|GO:0061630
Glsi04g1141 374 ProSitePatterns Zinc finger RING-type signature. 15 24 IPR017907 -
Glsi04g1141 374 SMART ring_2 2 46 IPR001841 -
Glsi04g1141 374 Gene3D SGNH hydrolase 245 324 IPR036514 -
Glsi04g1141 374 Pfam Zinc finger, C3HC4 type (RING finger) 8 46 IPR018957 GO:0046872
Glsi04g1141 374 ProSiteProfiles Zinc finger RING-type profile. 15 47 IPR001841 -
Glsi04g1141 374 MobiDBLite consensus disorder prediction 59 86 - -
Glsi04g1141 374 SUPERFAMILY RING/U-box 8 59 - -
Glsi04g1141 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 58 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1141 Glsi-ChrGlsi04 10530132 10535106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1141 6 204 C3H Transcription Factor Family AT4G27470 49.261 1.93e-46 157