Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1127 ATGGCATCATCGTCATCTTCTTCGGGCATATCGAGGTTGAGGGATCGCCGGAGAGCAGCCATGGCCGTCAAAAACTCAGCTTCAGCATCCGACAGAATCAGCAGCCTCCCTGACTCGCTCCTTTGTCACATCCTTTCTTTTCTCAAAACCAATCAAGCTGCCACCACGAGCATTTTGTCCAGGCGGTGGAGACTACTCTGGACTCTGGTCCCGGTCCTCGACCTCGAAGATCCGACCCCTTCCATGTGGGAATTCGGTCCCGGGTTCAACTTCGAACCTTGTGTCAAATTCGCCAATGTGGTAAACAAAGCCTTGATCCAACGCAGAACCCAGAATTTCAGAAGGCTCCGGATCTTGAGTCGGCACAAGGGCTGCGACCCGGCCCATATCACCGCCTGGGTTTGGGCGGCCGTCGCCGGAAACCTCGAGGAGATGGAGCTCTCTCTATTTCTCAACCGAAACGTCGACTTGCCATTCACCTTCTTCAGTTGCAGAACCATTGTAAATCTGAAGCTCAGTGGCAACATCAATCTGAATGTTCCTTCCCATGTTCATTTTCCGTCACTAAAGATTCTGAGTCTCATGGGGCTTCAGTTTGTGGATAATACTCCTGTAAGGAGGCTCCTTTCTGGATCTCCTGTTCTTGAAGACTTTTCTGTGGATATATTGACCAGTTTTCCATCGTCTCCTTTCAAGATTTCTACATCTTCTTTGAAGAAGCTGTGGATTATTTGTCAGTGTACTATCTATGAAGTTAAGGAACTCGAAATAAACACCCCATCGCTTGAGTATCTCAATGTTCAAGCCACTTCGGTTCAAGAGTATTTGGTTGGGAACCTTCAAAATGTGGTGGAAGCAAATCTTAACGTTTCGGTGGAGGATGGACCCAGTGACTGTGTGTTCAAGCTTTTCAAAGCAATCCATGGAGTCAAATATCTCTCTTTGTCTGTTCTTACCCTAGAGGCCTTTATTCTTGCTTCTAAACTGGACCTTCCGGAATTTCGCAATCTGGTTCGTCTGGACCTTACCCTTTCATGCTGTGACTCAAATTTGCTGGTGAACTTGCTTCGACAATGCCCACAACTCAAAGTTCTCATCGTTAAGAAGGTACCCTTTGATGGTTATGAACCATGCTGGAAAGAGCCAACAGGTAGTAGTATTCCTGATTGTCTTGAATCAAAGCTCGCCATGTTTGAGTTTAAGAAATATCGAGGCACCAAAGCTGAGCGAGGGCTCGCAGCATATGTTCTGAAGAATGCACGTTTCTTGAAGACAATGAACATTCAGACAGATAGTTATTTGAGTCCCGTGGAAAAGCACTGCATTTTCGAACAGTTGTCTAGCTCACCAAGAGGCTCAGATGCCTGTGAACTCGTCTTTCACAAAGTTGATCTTCGTCAAGAGGTTGATTATCAGCGGGGACCTTCTAGGAAGGAAACTCTACAAACTTGGGCTATTCATGTCTCCATGCTTTTTGGCAATGATGTGTTCACCTTTGCTCTATGTTATCGAGGCAGGGCACCTGGATTGGAATCCCGTATGTACCAAAAATTAGCCAATATTAAAGAAGTTAAGCTTGAGCGCAACCTCGGAAGTTTGATTCCTATCTTCTTCGCACTGAGAGGATTTGTTTACTACGATAGAGCCGAATGCAAATTTTGGTTGATTAAACTCAAGACTGAGCCAGCCGGTGTCAGATTTTGTTCAATCAATAAAGTTTGGAGTTTTAATTTGACAAAGTGGAAATGCTTCCCTACAAATACCATGGATGTCAGAGATGGAGAGACTGAAGTTTCAGTTTCTTCTATAAATTCCATATATTCTCAGCAGAAAGATGATCTTTCTCCAGAAGATCTTGCGTGGATTGATTCCTGCCTAATTGAAGATACAGATATTTTAGAAAGCAACTGGAATCCTCTGAAAAACGCTTTACTAGAAATTATTAGTTCGGGACCTGAATCTTTCAACACTGATGGAGGAGTTGGCATTGAGATTCTTCCCTTCAGTGAGAAGAAAAAAGTTGCAAAGTTTCAGGGAACTGGTAGTGATATTTTCCCTGTCAGTATAGCAGCAGAAAGAAGTACTGATGGTATTCTGGACAACAAAACGACTTACACTCTGTCACCATCAACCTTTGAAGAAATTCCTATGCCAATTTCTGATGGCAGCATGCAAGAGAGTAACCATATTGATTTAGAACTTGATCTGAGACCTTCAACTTATGATATGGAGCACTCATCTGAGTCTTCTTCAACTTATAATGTTCTACAAGTAAGTATAGCAGCAGAAACAGGTACTGATGATATTCCCGACAATGAAAAGACAAGAGTTCTGCCATCTTTAACTTTTCAGGGAAATCCTTTTTTGCCGACTTATAATGAAGACCTGAAAGAGAATGAAAGCATTGGTTTGGGACTTAATCTGGATTCTTCACCTAATGACATGGAGCAATCATCTGAGGATATCTTCAAAACCTGGGATTTGAATGTTCCATCTGAGGAAGGTGAACTTGTTAAACAGTTGAACAAAGCGTGGGCAGAAAATTCCTTTCAAATGCCACCATCGTCTCTTGATGATTCAGAGCAATGGAAAGTTGTGAATGAAGGCTCACTTGATAATCTTATTGCGGGCATTGCTGACCTGTCTCTTAATCAAGATGCTGGTTAA 2667 0.4316 MASSSSSSGISRLRDRRRAAMAVKNSASASDRISSLPDSLLCHILSFLKTNQAATTSILSRRWRLLWTLVPVLDLEDPTPSMWEFGPGFNFEPCVKFANVVNKALIQRRTQNFRRLRILSRHKGCDPAHITAWVWAAVAGNLEEMELSLFLNRNVDLPFTFFSCRTIVNLKLSGNINLNVPSHVHFPSLKILSLMGLQFVDNTPVRRLLSGSPVLEDFSVDILTSFPSSPFKISTSSLKKLWIICQCTIYEVKELEINTPSLEYLNVQATSVQEYLVGNLQNVVEANLNVSVEDGPSDCVFKLFKAIHGVKYLSLSVLTLEAFILASKLDLPEFRNLVRLDLTLSCCDSNLLVNLLRQCPQLKVLIVKKVPFDGYEPCWKEPTGSSIPDCLESKLAMFEFKKYRGTKAERGLAAYVLKNARFLKTMNIQTDSYLSPVEKHCIFEQLSSSPRGSDACELVFHKVDLRQEVDYQRGPSRKETLQTWAIHVSMLFGNDVFTFALCYRGRAPGLESRMYQKLANIKEVKLERNLGSLIPIFFALRGFVYYDRAECKFWLIKLKTEPAGVRFCSINKVWSFNLTKWKCFPTNTMDVRDGETEVSVSSINSIYSQQKDDLSPEDLAWIDSCLIEDTDILESNWNPLKNALLEIISSGPESFNTDGGVGIEILPFSEKKKVAKFQGTGSDIFPVSIAAERSTDGILDNKTTYTLSPSTFEEIPMPISDGSMQESNHIDLELDLRPSTYDMEHSSESSSTYNVLQVSIAAETGTDDIPDNEKTRVLPSLTFQGNPFLPTYNEDLKENESIGLGLNLDSSPNDMEQSSEDIFKTWDLNVPSEEGELVKQLNKAWAENSFQMPPSSLDDSEQWKVVNEGSLDNLIAGIADLSLNQDAG 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1127 888 CDD F-box_AtFBL13-like 33 68 - -
Glsi04g1127 888 SUPERFAMILY F-box domain 30 73 IPR036047 GO:0005515
Glsi04g1127 888 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 31 454 - -
Glsi04g1127 888 Gene3D - 17 73 - -
Glsi04g1127 888 Gene3D Ribonuclease Inhibitor 106 379 IPR032675 -
Glsi04g1127 888 ProSiteProfiles F-box domain profile. 30 66 IPR001810 GO:0005515
Glsi04g1127 888 SMART 9598neu4hmm 389 461 IPR006566 -
Glsi04g1127 888 Pfam FBD 385 428 IPR006566 -
Glsi04g1127 888 SUPERFAMILY RNI-like 131 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1127 Glsi-ChrGlsi04 10249469 10257782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1127 13 396 EF-hand Containing Proteins AT5G41840 26.897 6.82e-26 111