Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1111 ATGGATCGGGAGATGGAGATGGAAGATATTGAGTCCCAAACTACTTACAATAAAGCTGCTTCTGACATCTTCCAGAAAAGGAATCGTCCTGTTATTCTCAAGTTCGAGGATGTTCTCTATAAAATAAAGACCAAGAAAGGAGGATTATTAATTGCGAAGAAAATAGAAACAGAAGAAAAAGTGATACTAAAGGGAGTGACAGGGATGGTTAAACCTGGCGAAGTCCTAGCCATGCTAGGTCCATCCGGTAGTGGCAAAACCACTCTACTAACAGCGTTGGGAGGTCGGCTAGGCGTCGGGCGGCTTCACGGGACCATAACTTACAATGGTAAAGCATTCTCAAACTCAATGAAGAGAAATACAGGCTTTGTTACCCAAGATGATGTTCTCTACCCCCACTTGACTGTGACAGAAACCCTAGTTTTCACTGCCCTTCTAAGATTACCCAATAATTTCACAAAAAAAGAGAAGATTTTGCATGCAGAAGCAGTGATAACTCAACTTGGTTTAACCAAGTGTAAGGATAGCATCATTGGGAATTCACTTCTCAGAGGGGTTTCTGGGGGAGAAAGAAAAAGGGTTAGTATTGGGCAAGAAATGCTCATAAATCCTAGCTTGTTGCTTCTGGATGAACCCACTTCTGGGCTTGACTCAACCACGGCTCAAAGGATAGTGTCAAGTTTGTGGGAGTTGGCTAACGGAGGGAGAACTGTTGCTATGACTATACACCAACCTTCAAGTAGATTGTATTATATGTTTCATAAGGTTTTGTTGCTATCTGAAGGAAGCCCGCTGTACTTTGGTAAAGGATCTGAAGCCATGAAATATTTCTCTAGTATTGGGTTTTCCCCAGCTATTGCCATGAACCCTTCAGATTTCCTTTTGGATCTTGCAAATGGTGTTTACTCTGATGAATCGAAAGAAGATCATACCTTGGTTAAGCAGAAATTGATTTCTTCATATAAGAACAACCTTGATCCCCAATTGAAAGCAGTGCTTCATGAAATTGGTGATTCAGATCAAAGTCAAGATAGAAATCAAGGCAGAGAATTTGGAAGATGGCCTACATCTTGGACGCAGCAATTCTGTGTGTTGTTTAGAAGAGGAATCAAAGAGAGAAAACATGAATCTTTCTCTGGGCTGAGGATTGCTCAGGTGCTCATAGTTGCCATTGTTTCAGGACTTCTATGGTATAAGTCTGATATTTCGCACTTGCAGGATCAGATAGGGCTTCTATTCTTCATAGTAGGATTCTGGGGCTTCTTCCCTCTATTCCAAGCCATTTTCACCTTTCCCCAAGAACGAATGATGCTGGAAAAAGAACGATCTTCAGGAACCTATAGGCTCTCCTCCTACTTCATGTCAAGAACAGTAGCAGACCTTCCAATGGAACTTGTTCTTCCCACCATTTTTCTTCTCATAACCTACTGGATGGCAGGCCTAAAACCCAACGTCCTAAACTTCCTACACACTCTCTTTAGTCTCTTGTTTAGTGTGCTAGTCTCACAAGGCCTTGGCCTTGCCCTTGGTGCTTTGGTGATGGATCAAAAATCTGCAACCACGCTTGGGTCTGTGATTATGTTAAGTTTCATGCTGGCAGGTGGATTTTATGTTCAAAATGTGCCAAAGTTTATAGCTTGGATCAAGTATATATCTATAAGTTATTACACTTATCAGCTACTTGTGGGATCTCAGTATGATGCTAGGGACACATACCCTTGTTCTGAAAGGCAGTGTTTAGTGGCGGAGTTTGCTCCTATAAAGGAAATAGGCCTTGGTTTGAAGGGGCAGGCCATGGCTGCACTGGCTCTAGGGATAATGCTGACAGGTTATAGAGTTATAGCTTATTTAGCTCTGATGAGGATTGGGGTGACAAAGAAATTGGGGTAG 1890 0.4217 MDREMEMEDIESQTTYNKAASDIFQKRNRPVILKFEDVLYKIKTKKGGLLIAKKIETEEKVILKGVTGMVKPGEVLAMLGPSGSGKTTLLTALGGRLGVGRLHGTITYNGKAFSNSMKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNNFTKKEKILHAEAVITQLGLTKCKDSIIGNSLLRGVSGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIVSSLWELANGGRTVAMTIHQPSSRLYYMFHKVLLLSEGSPLYFGKGSEAMKYFSSIGFSPAIAMNPSDFLLDLANGVYSDESKEDHTLVKQKLISSYKNNLDPQLKAVLHEIGDSDQSQDRNQGREFGRWPTSWTQQFCVLFRRGIKERKHESFSGLRIAQVLIVAIVSGLLWYKSDISHLQDQIGLLFFIVGFWGFFPLFQAIFTFPQERMMLEKERSSGTYRLSSYFMSRTVADLPMELVLPTIFLLITYWMAGLKPNVLNFLHTLFSLLFSVLVSQGLGLALGALVMDQKSATTLGSVIMLSFMLAGGFYVQNVPKFIAWIKYISISYYTYQLLVGSQYDARDTYPCSERQCLVAEFAPIKEIGLGLKGQAMAALALGIMLTGYRVIAYLALMRIGVTKKLG 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1111 629 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 286 IPR003439 GO:0005524
Glsi04g1111 629 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
Glsi04g1111 629 Gene3D - 51 280 IPR027417 -
Glsi04g1111 629 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 22 616 - -
Glsi04g1111 629 Pfam ABC-2 type transporter 243 312 IPR043926 GO:0140359
Glsi04g1111 629 FunFam ABC transporter G family member 22 50 280 - -
Glsi04g1111 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 278 IPR027417 -
Glsi04g1111 629 Pfam ABC-2 type transporter 360 566 IPR013525 GO:0016020|GO:0140359
Glsi04g1111 629 Pfam ABC transporter 63 214 IPR003439 GO:0005524
Glsi04g1111 629 SMART AAA_5 72 263 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1111 Glsi-ChrGlsi04 10066805 10070699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1111 62 275 Calmodulin-binding Proteins AT2G36910 23.214 5.91e-09 57.4