Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1109 ATGGATAGCACCGAATCGTCTACGGGTTCGCAGCAGCCGAACCTGCCACCCGGCTTCCGGTTCCACCCGACCGACGAAGAGCTCGTGGTTCACTACCTCAAGAAGAAGGCCTCCTCTGCTCCTCTTCCCGTCGCGATCATCGCCGAGGTTGATCTTTACAAGTTCGATCCGTGGGAACTGCCAGCTAAGGCAGTGTTTGGGGAGCAAGAGTGGTACTTTTTTAGCCCAAGGGACAGGAAGTATCCGAACGGAGCTAGGCCAAACAGAGCTGCAACTTCTGGCTATTGGAAGGCAACTGGAACTGATAAGCCTGTCTTGGCCTCCGGTGGAAACCAGAAAGTTGGTGTGAAGAAAGCTTTGGTTTTTTATGGGGGGAAGCCCCCAAGAGGGATCAAAACCAATTGGATCATGCATGAATATAGGCTTGCTGATAATAAGCCTAACAATAAGCCTCCTGGGTGTGACTTGGGCAACAAGAAAAACTCTCTGCGCCTTGACGATTGGGTGTTATGCCGAATCTACAAGAAGAATAATACACACAGATCAGCTATGGATCACGACAGGGATGATTCATTGGATGATATAATTGGAGGGGTTCCTCCGTCAATCAACGTTGGGCAGATGAACGCAAGATTTCACCTTTCCAAGATGTCCACAAGCTATGGCGGTTCATTGCTAGACAACAACGATCATAATTTATTGGAAGGGGTTATAAGCAATAATAATGGTGGGATCAGCACCTGCAGTGCCATATCATCTTATCAATTGGGCATGTCAAACTCTAAGGCAGAGCTTCCTTTCGTCCCAACCATTGGTGCCACCTCTTCCAAACGAACACTCCCATCTTTGTATTGGAATCATGACGAGGATTTGGCTGGAACCTCATCAACGAACAAAAGATTGAGTTTTGATGATAATGGGGAAGGTATTGTTGTGAGGACAGATCATGATCAGAATGGTACTACTGCTAGTGCTAGTTCTATTGCTTCTCTGCTTAACCAGCTCCCATCACAAACCCCTTCGTTGCATCAACAAACAATGCTGGGAATGGGATCTTTAGGAGATGGGCTCATTCGGGCACCATATCAAATACCTGGAATGCATTGGTATGGTTAG 1116 0.4731 MDSTESSTGSQQPNLPPGFRFHPTDEELVVHYLKKKASSAPLPVAIIAEVDLYKFDPWELPAKAVFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASGGNQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNKPPGCDLGNKKNSLRLDDWVLCRIYKKNNTHRSAMDHDRDDSLDDIIGGVPPSINVGQMNARFHLSKMSTSYGGSLLDNNDHNLLEGVISNNNGGISTCSAISSYQLGMSNSKAELPFVPTIGATSSKRTLPSLYWNHDEDLAGTSSTNKRLSFDDNGEGIVVRTDHDQNGTTASASSIASLLNQLPSQTPSLHQQTMLGMGSLGDGLIRAPYQIPGMHWYG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1109 371 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Glsi04g1109 371 MobiDBLite consensus disorder prediction 1 20 - -
Glsi04g1109 371 MobiDBLite consensus disorder prediction 1 17 - -
Glsi04g1109 371 FunFam NAC transcription factor 56 24 181 - -
Glsi04g1109 371 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Glsi04g1109 371 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Glsi04g1109 371 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Glsi04g1109 371 PANTHER NAC TRANSCRIPTION FACTOR 56 15 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1109 Glsi-ChrGlsi04 10038555 10039894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1109 19 370 NAC Transcription Factor Family AT3G15510 54.891 2.30e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi04g1109 NAM 1.9e-39 No_clan