Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1082 ATGAGTATTGGTGAGTTGGGTATCCAGCAACCCGTTTATGAACTGGTGAAGACCCGGGAAACTACGATGGTGAAGGTGAAAGTTGTTAAGTGGGTTCCCTTTATTTTGGTAGTATTTCTGTCTTTGGTAGATGGGTCATTTGCCTTATTCACCCCTTCTGATAATTATCTGATTGCCTGTGGTTCTTCTCAAAACATCACCTTCCAAGCTCGCACTTTTGTTCCTGATTCACAGCATTCTTCATTAGTACTGGAAACTGGGAATTCTGTTGTTGCTAGTTCCAATTCTAGTGTCCCTTTTCCAATCTACCAATCAGCTCGGATTTTCACCGAGAAAGCTTCTTATAAATTTGAAATTCAGCCAGGTCGGCACTGGGTCCGGCCGTATTTCTTCCCTGTGTCAAACTCTGGCCATAACCTGACTTCTGCTTCTTTTACAGTAGTCACTGATGAATTTGTTCTCTTGAGCAACTTCACCTTTAAGAACTACAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTTACATCTGATACCTTGACTCTCACCTTCATCCCTTCAAATGGTTCTATAGTCTTTGTTAATGCTATTGAAGTTGTGTCAATGCCGAATGAGTTGTTTGTTGATCAAGCATTGGCTATAAATCCATCAGCTCCATTCAGTGGCCTTTCTGAACTTGCCTTTGAAACTGTTTACCGGTTGAACATGGGGGGTCCTTTGCTTACTGCTCAAAATGACACCCTTGGAAGGACTTGGGTGAATGATCTGAAATACCTCCATGTGAACAGTTCTGTCCTTAATGTTTCAGTCAGCCCTGCAAGCATCAAGTATCCAGCAGCTGTTACACCTGAGACAGCCCCAAATTGGGTTTATGCCACTGCAGAAACGATGGGCGACGCAAATGTAGCCCAAAATAATTTCAACATTACTTGGGTTTTCCCTGTGGATCCAAACTTCTCCTATTTTATTCGGGTGCACTTTTGTGATATTATGAGCGAGTCGCTCAACAGTTTAGTGTTTAATCTATTCATAAATACTGACATAGCTCTAGGAAGTCTTGACCTCTCATCCATCACTGGTGACTTGGCTGTGCCTTACTACAAGGACTTCGTCTCTAATGCCTCGACAGATTCGAACACTTTGACTGTAAGTGTTGGTCCAGATACAATGGCAGACATCACAAATGCCACCATGAGTGGGCTTGAGATAATGAAAATCAGCAATGCAGTAAAGAGCTTGGATGGGGTTTCTCCAGTTGAGAGTCTTCTTCCTAGTTCACCTTCTAAGAAGAACAAGATAGGAATAATAGCTGGTTCTTTTGTGGGTGCAATAGCTGCCATTGCATTGCTTGGTTTGTGTTATTGCTGCCTGGTGAGACGCAAGTCAAAGTCCAGTCAGCAAGGGCATCCTTGGCTGCCTTTGCCCTTATATGGAAACTCTCAGACCATGACAAAAATGTCAACAACTTCCCAGAAGAGTGGAACTGCAAGCTGCATTTCTTTAGCTGCATCGAGTCTGGGACGGTTCTTTAGTTTCCAAGAAATCCTAGATGCAACCAACAAATTTGATGAGAAACTGCTTCTTGGTGTTGGTGGTTTTGGTAGGGTTTATAAGGGAACACTTGATGATGGGACCAATGTAGCTGTTAAAAGGGGCAACCCTAGATCTGAACAAGGTATTGCTGAATTCCGAACTGAAATTGACATGCTATCCAAGCTTCGCCATCGTCATCTTGTGTCTCTCATTGGCTATTGTGATGAGAGGTCAGAAATGATTCTTGTCTATGAATACATGGCTAATGGACCTCTTAGGAGCCACCTGTATGGAACAGACCTGCCATCTCTATCATGGAAGCAGCGGCTTGAAATTTGCATTGGAGCAGCAAGAGGCCTCCATTATCTTCACACTGGTGCAGCTCAAAGCATAATTCACCGAGATGTGAAGACAACAAACATCCTCTTAGATGATAATTTGGTTGCTAAAGTTGCTGATTTTGGCCTCTCAAAAACTGGTCCTTCTCTTGATCAGACCCACGTGAGCACTGCTGTTAAAGGTAGTTTTGGTTATCTTGATCCAGAATACTTCAGAAGACAACAGCTCACAGAGAAATCAGATGTGTATTCATTTGGAGTAGTTCTAATGGAAGTGTTATGTACAAGGCCAGCTCTGAACCCTGTCCTTCCAAGGGAGCAGGTTAATATAGCTGAGTGGGCAATGACCTGGCAGAAAAAGGGGATGCTTGATCAAATCATGGATCAAAATCTGGTGGGGAAGGTGAATCCTGCTTCTCTTAAGAAGTTTGGGGAGACAGCTGAGAAGTGCTTGGCTGAGCATGGTGTGGATAGGCCATCCATGGGAGATGTCTTGTGGAATCTTGAATATGCTCTGCAGCTTCAGGAGACCTCATCCGCCCTCATGGAACCTGAAGATAACAGCACAAACCACATTACTGGAATTCAACTGACTCCACTCGAGCATTTTGATAATAGTGTGAGTATGATTGACGGGGGCAACTCTGTCACAGATGATGATCCAGAAGATGCTGCCACAAGTGCGGTGTTCTCACAATTAGTAAATCCTCGAGGAAGATGA 2595 0.4347 MSIGELGIQQPVYELVKTRETTMVKVKVVKWVPFILVVFLSLVDGSFALFTPSDNYLIACGSSQNITFQARTFVPDSQHSSLVLETGNSVVASSNSSVPFPIYQSARIFTEKASYKFEIQPGRHWVRPYFFPVSNSGHNLTSASFTVVTDEFVLLSNFTFKNYNGSFMFKEYAINVTSDTLTLTFIPSNGSIVFVNAIEVVSMPNELFVDQALAINPSAPFSGLSELAFETVYRLNMGGPLLTAQNDTLGRTWVNDLKYLHVNSSVLNVSVSPASIKYPAAVTPETAPNWVYATAETMGDANVAQNNFNITWVFPVDPNFSYFIRVHFCDIMSESLNSLVFNLFINTDIALGSLDLSSITGDLAVPYYKDFVSNASTDSNTLTVSVGPDTMADITNATMSGLEIMKISNAVKSLDGVSPVESLLPSSPSKKNKIGIIAGSFVGAIAAIALLGLCYCCLVRRKSKSSQQGHPWLPLPLYGNSQTMTKMSTTSQKSGTASCISLAASSLGRFFSFQEILDATNKFDEKLLLGVGGFGRVYKGTLDDGTNVAVKRGNPRSEQGIAEFRTEIDMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPSLSWKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDDNLVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTPLEHFDNSVSMIDGGNSVTDDDPEDAATSAVFSQLVNPRGR 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1082 864 FunFam Putative receptor-like protein kinase 55 204 - -
Glsi04g1082 864 Pfam Protein tyrosine and serine/threonine kinase 528 790 IPR001245 GO:0004672|GO:0006468
Glsi04g1082 864 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Glsi04g1082 864 FunFam Receptor-like protein kinase FERONIA 599 815 - -
Glsi04g1082 864 Gene3D Phosphorylase Kinase; domain 1 481 598 - -
Glsi04g1082 864 Gene3D Transferase(Phosphotransferase) domain 1 599 818 - -
Glsi04g1082 864 PANTHER OS07G0166700 PROTEIN 509 800 IPR045272 GO:0004714|GO:0006468
Glsi04g1082 864 SUPERFAMILY Protein kinase-like (PK-like) 502 794 IPR011009 -
Glsi04g1082 864 SMART serkin_6 523 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1082 864 ProSiteProfiles Protein kinase domain profile. 523 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1082 864 Gene3D - 227 409 - -
Glsi04g1082 864 Gene3D - 55 204 - -
Glsi04g1082 864 CDD STKc_IRAK 529 794 - -
Glsi04g1082 864 Pfam Malectin-like domain 58 407 IPR024788 -
Glsi04g1082 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Glsi04g1082 864 FunFam Receptor-like protein kinase FERONIA 228 409 - -
Glsi04g1082 864 FunFam receptor-like protein kinase FERONIA 484 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1082 Glsi-ChrGlsi04 9560748 9563630 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1082 28 864 Receptor kinase-like Gene Family AT3G46290 51.826 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Glsi04g1082 Malectin_like 8.8e-37 CL0202