Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1072 ATGGGCATGCTGGAGCCATTCAAGTGGACGCATTTTGTTTTAGCTTTTCTTCTAAACATGGGTAATGAATCCTTTGCCTCATTTACTCCTGTTGACAATTACTTGCTCGCCTGTGGTTCTTCCAGGAATATAGTCTTCCAGGGTAGGACTTTTGTTCCCGACTCTGACTATAACCTCTTACTGGAAGCCGATAAATCTGTTACAGTTAGCTCTAATTCAATGGTCCCATTTCCAGTTCATGAGTCAGCTCGAGTCTTCTGGAGCAGATCTTCATATACATTCAGAATTGAGAAACAAGGCTGGCACTGGATCCGCCTTTACTTTTACCCTATACCAAACTTGAACCACAACTTGTCCTCCGCCTCAATAGCAGCAGTAGCTGATAGTTTTGTGCTTCTCAACAATTTCACGTTCATGAAGTATGAAGGTTCTCACTTGTTCAAGGAGTATGCAATCAATATTACATCACCTACCTTTTCTATCACATTCATCCCTTCTAGCCATTCAGTTGTCTTCGTTAATGCAATCGAAGTCGTCTCAATACCAGATGAGCTCTTTCCTCATCAAGCAATGGCTCTAAATTCCTCTTCCCCATTTGACATTTCAGGATTGGCCCTTGAAATAATTTACCGGTTGAATGTGGGCAGTGAATCTCTCAACATCCAGAATGATAACCTTGGTAGGAATTGGGAGGACGATGAAAAATATCTCTCCTCCAATAGCAGTGGTGCTCTGAATATTTCAGTTAATCCTTTGGCTATAGTCTATCCTTCTGCCACTACACATGAGATAGCACCGGCATGGGTTTATGCTACAGCCAAAGCCATGGCAGATGCACAGAGATCACCCAATTTAAGTTGGTCCTTCCCCATATATCCAAACTTCAGCTACGTTGTCCGGGTGCATTTCTGTGATATCATAAGCAAGTCACTCTACGCATTATTTTTTGATCTATTTATAAATGGTGACATTGCTATTGAAGAACTCGAACTACCCTCTATAACTGGTGACTTGTCTATGCCATATTACAAGGACTTCGTCGTCATCCCTACAGCAAACACTTTGACCGTAAGTGTTACTCCTGGTAGATTGGCGTATGCACAAAATGCAACTATGAGTGGGCTGGAGATAATGAAGATTAGAAATGAGAAATCAGATAGTATTCTTCCCAATTCATCCCCAAGAAATGGGAAAGCAGATAATATTCTTCCTAATTCTTCCCCAAGAAATGGGAAATCAGCCATTATTGTTGGCAGTAGTGTCAGTGCTGCAGCTTTCCTAGTTCTCATTGGAATAACTTTGTATTACATAACAACTTACGGGTCAAAGTCAAGCTCGGTAGCTACTCTCAAATCTTGCAGACTTTTTACTTTCCGAGAAATCCAAGATGCAGCAAACAACTTTGATCAAAGCCTGTTTCTTGGAGAAGGTGGTTTTGGCAAGGTATATAAAGGAAAGATTGAAAATGGGAAGAAAGTAGCCATCAAAGTAGCGAATCACAAATCAAGACAAGGTCTTCATGAATTTCAAAATGAGATTGAGTTACTATCCAAGCTCTTCCATCAGAACCTTGTCTCTCTAATAGACTATTGTAACGAAGGCTCGCGAATGATTCTAGTATACGAATACATGGCAAATGGATCCTTTTGTGGCCATCTCCATGGGACAAACTCTGTCCCTTTGTCATGGAAGCAACGACTTGGAATATGCATTGGAGCTGCAAAGGGTCTTTACTATCTTCACACAGGAGCTCATCAAAGCATAATTCATCGCGATGTAAAGACAGCAAATATACTCTTGGATGAGAATCTTGTTCCAAAAGTTGCTGATTTTGGCATCTCAAGAAAAGGTCCACCTCTTGATAAGAGCCACGTGACAACTGCAGTAAAGGGAAGCTTTGGTTATCTTGATCCTGAGTATTTCAGAACTAAACTTCTCACTGAGAAATCAGATGTGTACTCATTTGGGGTGGTTCTGATGGAAGTTATCTGTGGCAAGTCTGCTTTAGATAATGCTCGTCCAACAGAGGAAATTAATTTGACAAGATGGGCGTCAACCTGCCAAGAAGAGGGCACTTTTCATCAGATTATGGACCCAAATCTGAGTGGGAAAGTGAATTTGGATTCTCTGAATAAGGTTTGTGATTTGGCTTGGAAGTGCTTAGAGGAGCATCGGGCAAATAGACCATCAATGGGGTATGTACTGTGTCAACTAGAAGATGCTCTCCACCTTGAGTTGGCGTCACCAACTTGGAGAGTTTCTATGGACTCTGTCACTGCTGTGGATGCGGAAGATGGAATCAAGGATGACAATGAACAAGTTGCTTCTTGA 2331 0.4148 MGMLEPFKWTHFVLAFLLNMGNESFASFTPVDNYLLACGSSRNIVFQGRTFVPDSDYNLLLEADKSVTVSSNSMVPFPVHESARVFWSRSSYTFRIEKQGWHWIRLYFYPIPNLNHNLSSASIAAVADSFVLLNNFTFMKYEGSHLFKEYAINITSPTFSITFIPSSHSVVFVNAIEVVSIPDELFPHQAMALNSSSPFDISGLALEIIYRLNVGSESLNIQNDNLGRNWEDDEKYLSSNSSGALNISVNPLAIVYPSATTHEIAPAWVYATAKAMADAQRSPNLSWSFPIYPNFSYVVRVHFCDIISKSLYALFFDLFINGDIAIEELELPSITGDLSMPYYKDFVVIPTANTLTVSVTPGRLAYAQNATMSGLEIMKIRNEKSDSILPNSSPRNGKADNILPNSSPRNGKSAIIVGSSVSAAAFLVLIGITLYYITTYGSKSSSVATLKSCRLFTFREIQDAANNFDQSLFLGEGGFGKVYKGKIENGKKVAIKVANHKSRQGLHEFQNEIELLSKLFHQNLVSLIDYCNEGSRMILVYEYMANGSFCGHLHGTNSVPLSWKQRLGICIGAAKGLYYLHTGAHQSIIHRDVKTANILLDENLVPKVADFGISRKGPPLDKSHVTTAVKGSFGYLDPEYFRTKLLTEKSDVYSFGVVLMEVICGKSALDNARPTEEINLTRWASTCQEEGTFHQIMDPNLSGKVNLDSLNKVCDLAWKCLEEHRANRPSMGYVLCQLEDALHLELASPTWRVSMDSVTAVDAEDGIKDDNEQVAS 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1072 776 SMART serkin_6 468 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1072 776 CDD STKc_IRAK 474 739 - -
Glsi04g1072 776 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 193 740 - -
Glsi04g1072 776 Gene3D Transferase(Phosphotransferase) domain 1 544 752 - -
Glsi04g1072 776 Pfam Malectin-like domain 37 380 IPR024788 -
Glsi04g1072 776 FunFam Receptor-like protein kinase FERONIA 544 759 - -
Glsi04g1072 776 FunFam receptor-like protein kinase FERONIA 435 543 - -
Glsi04g1072 776 MobiDBLite consensus disorder prediction 386 406 - -
Glsi04g1072 776 ProSiteProfiles Protein kinase domain profile. 468 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g1072 776 Gene3D - 33 181 - -
Glsi04g1072 776 Gene3D - 204 382 - -
Glsi04g1072 776 ProSitePatterns Protein kinases ATP-binding region signature. 474 496 IPR017441 GO:0005524
Glsi04g1072 776 FunFam Putative receptor-like protein kinase 33 182 - -
Glsi04g1072 776 SUPERFAMILY Protein kinase-like (PK-like) 442 738 IPR011009 -
Glsi04g1072 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Glsi04g1072 776 Gene3D Phosphorylase Kinase; domain 1 439 543 - -
Glsi04g1072 776 FunFam Receptor-like protein kinase FERONIA 205 382 - -
Glsi04g1072 776 Pfam Protein tyrosine and serine/threonine kinase 474 735 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1072 Glsi-ChrGlsi04 9458546 9460876 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1072 20 747 Receptor kinase-like Gene Family AT2G21480 42.876 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Glsi04g1072 Malectin_like 4.4e-33 CL0202