Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1060 ATGAATGGGAAGGCCAACGTTTCTAAAGAGCTCAACGCCAGGCACAAAAAGATACTGGAAGGACTTCTTAAATTGCCAGAGAATAGGGAATGTGCCGACTGCAAAGCTAAAGGTCCAAGATGGGCCAGTGTGAATCTTGGCATCTTTATTTGCATGCAATGTTCAGGAATACATAGAAGTCTCGGGGTACATATATCAAAGGTTCGGTCTGCGACTCTGGACACTTGGCTTCCAGAGCAGGTTGCATTCATTCAATCCATGGGAAATGAGAAAGCTAATTGCTACTGGGAAGCAGAGTTACCCCCAAATTACGATAGAGTTGGAATCGAGAATTTTATTCGTGCAAAATATGAAGAGAAGAGATGGGTTCCAAGGGATGGAAAACTGAAATCACCTTCTAGACAGCAGGAAGACAGGACTTCTTCATATTGGCAGAGGCCTGCAGAAAGAAGTGGGCATGGTTATGCATCTGTTTCTGAGAACACTTTTGATGAAAGGAAGAAAACCCATCCATCAAATACAATTCCTGTAACAAGAATTAGTGTTCCTGCTCCTCCAAAAGCACCTGAACAGGTATATCCTGTTACAAAACCTCAGCTTGTAGAGAAAGTGGAACCAGTGGCACCACAATTGCTAGCTGAAACAACAAAACAGGCTACTGACATGGCTCAAAATACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTTGACATGTTGTCCATGGATGCCCCAAGTGAAAATGGCTCAGAGGCAGCTGCTGCTACTGCTGATGATAATAACTGGGCAGGTTTTCAATCTGCTACAGAACCATCAACATCTGAGAAGTCAAGTCCTACGAAAGCAGTTGAGAGCACTCCCCAGTCTAATTCTGGAATCGAGGATCTTTTTAAAGATTCACCTTCAGTAACACCTGTAGTTCCAGAGAAACCCCAAAAAGATTTGAAAAACGATATCATGAGCCTCTTTGAGAAGTCCAGTATGGTGTCTCCATTTTCTGTGCATCAGCAGCAGCTTACCATGCTGGCGCAGCAACAGTCCCTTCTAATGGCTGCTGCAGCTAATTCGGTCAGTGGGAACCCCAAGTATCCTGCTAGTGTACCACAACCTGGACTGAATGGGTCCAATATTCCTGTTCAAAGTTGGCCAACTGCTGGCCACCCAATTCCTGGAGTATTGCCCATGGGTGGTCAGGGAGACCTGCAGAAACTTGTGCAGACTAGGAACGCAACACCAGCACATCCACCAGGGGGTTCTGTGCAGTACCCAACATCGAGTTTCTATACAATGGGACAGGCTTCACCATCTAATGGTATGATGACAACGGGAGTGAGTAAGCCTCGGTCAGCAGCTACAGTGCCATCAACAACTTCACAGGCAGCTAAGGATTATGATTTTTCCTCTTTAACACAAGGGATGTTTGCCAAACATTGA 1434 0.4526 MNGKANVSKELNARHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANCYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGKLKSPSRQQEDRTSSYWQRPAERSGHGYASVSENTFDERKKTHPSNTIPVTRISVPAPPKAPEQVYPVTKPQLVEKVEPVAPQLLAETTKQATDMAQNTPPKVDYATDLFDMLSMDAPSENGSEAAAATADDNNWAGFQSATEPSTSEKSSPTKAVESTPQSNSGIEDLFKDSPSVTPVVPEKPQKDLKNDIMSLFEKSSMVSPFSVHQQQLTMLAQQQSLLMAAAANSVSGNPKYPASVPQPGLNGSNIPVQSWPTAGHPIPGVLPMGGQGDLQKLVQTRNATPAHPPGGSVQYPTSSFYTMGQASPSNGMMTTGVSKPRSAATVPSTTSQAAKDYDFSSLTQGMFAKH 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1060 477 CDD ArfGap 19 117 - -
Glsi04g1060 477 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Glsi04g1060 477 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Glsi04g1060 477 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Glsi04g1060 477 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 477 IPR044520 GO:0005096
Glsi04g1060 477 MobiDBLite consensus disorder prediction 263 297 - -
Glsi04g1060 477 MobiDBLite consensus disorder prediction 263 312 - -
Glsi04g1060 477 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Glsi04g1060 477 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Glsi04g1060 477 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Glsi04g1060 477 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Glsi04g1060 477 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Glsi04g1060 477 MobiDBLite consensus disorder prediction 409 459 - -
Glsi04g1060 477 MobiDBLite consensus disorder prediction 126 191 - -
Glsi04g1060 477 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1060 Glsi-ChrGlsi04 9307010 9312588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1060 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 3.08e-29 115