Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1058 ATGGCCAAGTCTGTGCCTTTGGTTTCCTCCGTTTTCGTCATGCTTCTGCTTCTTATGGCCACTGAGATGGGGCCAATGGTGGCAGAAGCGAGGACTTGTGAGTCTCAGAGCCACCGCTTCAGGGGACCCTGTGTGAGTAGTTCTAACTGCGGTTCTGTTTGCCATACCGAAGGCTTCCCTGGCGGCCACTGCCGTGGCTTCCGTCGCCGATGCTTCTGCTCCAAACCTTGTTAG 234 0.5598 MAKSVPLVSSVFVMLLLLMATEMGPMVAEARTCESQSHRFRGPCVSSSNCGSVCHTEGFPGGHCRGFRRRCFCSKPC 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1058 77 PRINTS Purothionin signature 32 47 IPR008176 GO:0006952
Glsi04g1058 77 PRINTS Purothionin signature 62 76 IPR008176 GO:0006952
Glsi04g1058 77 ProSitePatterns Gamma-thionins family signature. 31 54 IPR008176 GO:0006952
Glsi04g1058 77 PANTHER DEFENSIN-LIKE PROTEIN 1 10 74 - -
Glsi04g1058 77 SUPERFAMILY Scorpion toxin-like 31 77 IPR036574 -
Glsi04g1058 77 SMART gth_4 32 77 IPR003614 GO:0006952
Glsi04g1058 77 CDD Knot1 42 73 IPR003614 GO:0006952
Glsi04g1058 77 Gene3D - 31 77 IPR036574 -
Glsi04g1058 77 Pfam Gamma-thionin family 31 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1058 Glsi-ChrGlsi04 9283368 9283694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1058 1 77 Plant Defensins Gene Families AT2G02100 63.636 8.73e-35 111