Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1041 ATGGCCACTTCACAGCAAGATTCGTCACGTGCTTCACGCATGTACTGCTACACCTCAGACGAAGATCACGACGACCTCGAAGACAATAGCGACGTTAATGACAGCGAGTACATCGAGGAAGAAGAATTAGAAGAAAACGACGACGACAAGGTCGGCGGGTGCTGGCCAAACGCCATCACACTCAACAGCGGTGTACGGTGTGGGTCTCGACGGGCTGGTTGGTCGCTGGGCGAGGTGTTTGACCCGAGAGCGAAATGGGTTCAAGAATGGAACAGGGTGTTCCTGCTGGTGTGTGCAGTCGGGTTGTTCGTGGACCCGCTCTTCTTCTACGCGCTCTCCGTAAGCGACACGTGCATGTGCCTCTTCGTCGATGGGTGGTTCGCCCTCACCGTGACGGCGCTCCGGTGCATGACGGACGCGGTGCACATGTGGAACATGTGGCTTCAGCTTAAGATGGCCAAACGGAGCTTCGGCCTCGGTGCTGGAAGTGGGCTCATGGACACGAACTCTCGCTCAGCGGCTCGTCGCTATCTCAAGGCCAAGAAGGGCTTCTTATTTGACCTCTTCGTTATTCTTCCTCTTCCCCAGATTGTAGTATGGGTGACAATCCCCTATCTGTTGGAGAAAGAGCTAGTAATATTGGTGATGACAGTGTTCTTAATAATGTTCTTGTTCCAATACCTTCCCAAAATATACCATTCTGTTTGCCTCTTGCGTCGCATGCAAAACCTTTCTGGTTACATTTTTGGAACCGTTTGGTGGGGTATCGCCCTTAACATGATCGCTTACTTTGTCGCCTCTCATGCAGCAGGGGCATGTTGGTACCTGCTAGGGATACAAAGGGCAGCCAAGTGCCTGAAAGAGCAATGCGGGAAAACAAATGGATGTGGCCTTGGGATGCTGTCTTGTAAACAACCTATATACTATGGAACCGCTAGTATGGTGAGGGACAGAGCAAGGTTGGCATGGGCAGAGAATAGGCAAGCAAGGTCTACTTGCTTAGATAGCTCTGAGAATTACGGCTATGGAGCTTATAAATGGACTGTTCAACTTGTCACTAATGATAGTCGAATGGAAAAGATACTCTTCCCTATTTTCTGGGGCCTAATGACTCTCAGCACTTTTGGAAACCTTGAGAGCACGACGGAATGGCTAGAAGTTGTTTTCAACATTGTTGCTTTGACCAGTGGCCTTCTTCTAGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATAGAATGGTGGATGAGGAAAAGGCGGTTGCCTCAAGGGTTCCGGCAGCGAGTGCGTACCTACGAACGCCAGCGCTGGGCTGCAATGCGTGGGGTTGATGAATGCCAGATGATCACAAATCTCCCAGAGGGTCTTAGAAGGGACATCAAGTACCATCTCTGTTTGGATTTGGTCAGGCAGGTGCCACTTTTTCAGCATATGGATGATCTGGTCCTAGAGAACATTTGCGACCGTGTGAAGTCCCTCATATTCACAAAGGGAGAGATTATAACCAGAGAGGGAGACCCAGTACAAAGAATGCTCTTCGTAGTAAGAGGTCACCTTCAAAGCAGCCAAGTCCTAAGAGACGGTGTGAAAAGTTGCTGCATGTTAGGTCCAGGAAACTTCAGCGGCGACGAGCTCCTTTCTTGGTGTTTAAGAAGACCCTTCATAGAACGTCTTCCACCATCTTCATCAACCCTAATCACATTGGAAACCACAGAGGCATTTGGGCTCGAAGCAGAGGACGTGAAGTACGTGACTCAGCATTTTAGGTACACATTTGTGAAGGAGAAGGTCAAAAGAAGCGCCAGGTATTACTCCCCTGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAGTTGGCTTGGAGAAGGTATAAGCATCGCTTGACTTTGACGTCGTTGTCGTTCATACGGCCTCGGAGACCTTTATCGCGAAGCTCCTCCATGGGGGAGGATAGGATTCGGCTTTATACTGCTTTGTTAACTTCTCCAAAGCCTAATCAGGATGATTTTGATTTTTGA 2067 0.491 MATSQQDSSRASRMYCYTSDEDHDDLEDNSDVNDSEYIEEEELEENDDDKVGGCWPNAITLNSGVRCGSRRAGWSLGEVFDPRAKWVQEWNRVFLLVCAVGLFVDPLFFYALSVSDTCMCLFVDGWFALTVTALRCMTDAVHMWNMWLQLKMAKRSFGLGAGSGLMDTNSRSAARRYLKAKKGFLFDLFVILPLPQIVVWVTIPYLLEKELVILVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCGKTNGCGLGMLSCKQPIYYGTASMVRDRARLAWAENRQARSTCLDSSENYGYGAYKWTVQLVTNDSRMEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIVALTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRTYERQRWAAMRGVDECQMITNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEIITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRIRLYTALLTSPKPNQDDFDF 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1041 688 CDD CAP_ED 491 597 IPR000595 -
Glsi04g1041 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 73 653 - -
Glsi04g1041 688 SUPERFAMILY Voltage-gated potassium channels 82 412 - -
Glsi04g1041 688 FunFam cyclic nucleotide-gated ion channel 4 489 607 - -
Glsi04g1041 688 FunFam Cyclic nucleotide-gated ion channel 1 418 482 - -
Glsi04g1041 688 SUPERFAMILY cAMP-binding domain-like 417 605 IPR018490 -
Glsi04g1041 688 ProSiteProfiles cAMP/cGMP binding motif profile. 491 601 IPR000595 -
Glsi04g1041 688 Gene3D Jelly Rolls 489 607 IPR014710 -
Glsi04g1041 688 Gene3D Helix hairpin bin 416 482 - -
Glsi04g1041 688 Pfam Ion transport protein 90 408 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi04g1041 688 Pfam Cyclic nucleotide-binding domain 512 599 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1041 Glsi-ChrGlsi04 9121106 9129776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1041 64 687 Ion Channels AT5G54250 79.154 0.0 1036