Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1040 ATGCTTAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAATATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTTAGAACCCTTCAAACACATTATAAGAGGAAGCATGGGATCAAACCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACTCAGGAGAACTCATGGAACAACTTGTATAGCATCTTAAAAGAAAATTCAATTGATTCCACAATTTCTATCAGATCGGGCGTGTATACTTTGCATCCCGAGCTCACCTTCTTCCTCGACCAAGCTCACCCTTCTTCCTCGACCAAGCTCACCCTTCTTCCTCGACCCCTTCTTCCTCGACCAAGCTCACCCCTTCTTCCATTTCATCGAAGCTCCACGATCTACATCCCGAGCTCACCCCTTCTTCCATTTCGTCAAAGCTCTTCGATCTGCATCCCGATCTCACCCCTTCTTCCTTTCCTCGAAGCTCCTTATCTGCATCCCAAGCTCGTGGCTTCTTTGCTTCGTCTCTCTCGGCTTCGGCTCTCCACTTCTCTCTCGATTTGGGGCTCTCCACTTCTCTCTTGA 588 0.4796 MLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTQENSWNNLYSILKENSIDSTISIRSGVYTLHPELTFFLDQAHPSSSTKLTLLPRPLLPRPSSPLLPFHRSSTIYIPSSPLLPFRQSSSICIPISPLLPFLEAPYLHPKLVASLLRLSRLRLSTSLSIWGSPLLS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1040 195 PANTHER ZINC FINGER PROTEIN WIP2 1 65 IPR043584 GO:0003700|GO:0010468
Glsi04g1040 195 SUPERFAMILY beta-beta-alpha zinc fingers 29 61 IPR036236 -
Glsi04g1040 195 Gene3D Classic Zinc Finger 29 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1040 Glsi-ChrGlsi04 9102230 9107657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1040 1 70 C2H2 Transcription Factor Family AT3G57670 81.429 6.66e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g1040 None None None