LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g1037	ATGGAATTAAGCAATCTTCTCGACTTTAGTGTAGCAAATTGGCTTGCAGTAAGGCCACCAGCATACCCGCCCGTCAGAAAGGATGGCATTGAAAAAAAACTGCACAGAGGAGAAAGGCCAGGAAAGAAAAGTAAAGTGGTGACGCAAAAGTTAATCGGGAATCCTCTGGAAGGGCCTTGCACTGATCTTCCCGAGAATGTGAATCTAATTGACAATAATTTTACGAGCAGGTCAGGAGGTGGTAGTGGTGGTACCACAGCGAAGGATGCACTCGGAAATGATGTCCTTGCCTCTGTATGGCTAACTCAAGCTGAGAACAAGTTCATCTGTCCATGCCATGGTTCTCAGTACAACAACGAAGGCAGGATTGCCAGAGGCCCTGCTCCTCTGATGAGTTTGACTATAAGCTACTGTGGAAGCCATGGTCTTCGATCTTTCAGAATTTCAAACTGCAATCTTGACCGCGATAGCCGTCACGGCAAATATATTGCTCCTGTGAACACGCACAAGAAACCCTTCAAACCTGATAATCTTTTCCAGTCAATGTGGAAAATTGATAGTACCACTACCAGCATAAAGGCTGTAGTAGGATCCATGGCAGGTACTGGCTATAATCCCTTGGTGGCTGTGGATGGCAAACTTGGTTGCACCACTCCTCGTAAAAGCTATCATGATATTATCTATGCTATGCATCCAAGTCATGGTCATTGTATACATCTCAGGAACTACAATTATTTTCCTTCAAGTCAGGAAGTAGCTGATTCTGTTTATGCTTTGGCTGATGGAAGCCTAAATGACTGGTTTGGAGGCTTGCTATATTCAGCCGGACAACAAGCCAATGTAGCTGTTCAAGACCAACTATTGTCACTCAGTTTCACTAGTTTAGCAGTAATTTATGGGGCAGGGCTTGTAACTAGCCTTTCTCCCTGTACACTGAGTGTCTTAACACTGACCCTTGGTTACATTGGTGAGCTTACTACTGTTTTACACTCTCAGTATGAATTCCTTTTCAAATGCCTGAATTTGTGGGTTGGAATCTGGCAGGGGCGTTTGGCTCTGGCAAAAGCAGAGCTGAGTAGCTTGTATCTTCTGTTTCTTGGGACTTCTACTCTGGTCTTCATTAGGAGTAGTTCAAGTCTTGCAACCACATTAGCACTTTTGGGTGTAGCAGCATCATTTGCTGGAAAGGCTTATGGACAAATAGGCCAAGGATTACCTTTGGCTGCTTCTGGTTTGGCTGTAATTATGGGTCTGAATCTGCTTGAGATAATTGAATTACAACTCCCCTCATTCTTTGACAATTTTGATCCACGTGCAGCAGCAGCCAATTTACCATCAAGTGTGCAGGCATATCTGGCTGGGCTTACTTTTGCTTTAGCTGCCTCACCTTGTAGTACACCAGTGTTGGCAACTATTCTGGGATATGTTGCTGCATCAAAGGATCCAGTGATTGGAGGCAGCTTACTTTTGACATACACAACTGGTTATGTTTCTCCTTTACTCTTAGCTGCTTCGTTTGCTGGAGCATTACAGAGTCTGCTATCATTCCGCAAGTTCTCAGCATGGATCAATCCTGTTGGGTAA	1584	0.4432	MELSNLLDFSVANWLAVRPPAYPPVRKDGIEKKLHRGERPGKKSKVVTQKLIGNPLEGPCTDLPENVNLIDNNFTSRSGGGSGGTTAKDALGNDVLASVWLTQAENKFICPCHGSQYNNEGRIARGPAPLMSLTISYCGSHGLRSFRISNCNLDRDSRHGKYIAPVNTHKKPFKPDNLFQSMWKIDSTTTSIKAVVGSMAGTGYNPLVAVDGKLGCTTPRKSYHDIIYAMHPSHGHCIHLRNYNYFPSSQEVADSVYALADGSLNDWFGGLLYSAGQQANVAVQDQLLSLSFTSLAVIYGAGLVTSLSPCTLSVLTLTLGYIGELTTVLHSQYEFLFKCLNLWVGIWQGRLALAKAELSSLYLLFLGTSTLVFIRSSSSLATTLALLGVAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATILGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPVG	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g1037	527	Pfam	Cytochrome C biogenesis protein transmembrane region	379	527	IPR003834	GO:0016020\|GO:0017004
	Glsi04g1037	527	Pfam	Rieske [2Fe-2S] domain	105	129	IPR017941	GO:0051537
	Glsi04g1037	527	SUPERFAMILY	ISP domain	100	131	IPR036922	GO:0051537
	Glsi04g1037	527	PRINTS	Rieske 2Fe-2S subunit signature	108	120	IPR005805	GO:0016020\|GO:0051537
	Glsi04g1037	527	PRINTS	Rieske 2Fe-2S subunit signature	120	132	IPR005805	GO:0016020\|GO:0051537
	Glsi04g1037	527	PANTHER	CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED	289	526	-	-
	Glsi04g1037	527	Gene3D	-	85	139	IPR036922	GO:0051537

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g1037	Glsi-ChrGlsi04	8993354	9003757	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g1037	253	526	Chloroplast and Mitochondria Gene Families	AT5G54290	66.423	4.31e-108	325